Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P22510_001 | Banana | cytosol | 87.56 | 90.37 |
| GSMUA_Achr2P06650_001 | Banana | cytosol | 83.94 | 83.08 |
| EES16055 | Sorghum | cytosol | 83.42 | 82.99 |
| Zm00001d035304_P001 | Maize | mitochondrion | 82.9 | 82.05 |
| Zm00001d041725_P001 | Maize | cytosol | 80.83 | 79.59 |
| TraesCS5D01G115000.1 | Wheat | cytosol | 80.31 | 79.08 |
| TraesCS5B01G107400.1 | Wheat | cytosol | 80.31 | 79.08 |
| HORVU5Hr1G028180.1 | Barley | cytosol | 80.31 | 79.08 |
| VIT_03s0091g01010.t01 | Wine grape | cytosol | 79.27 | 78.87 |
| PGSC0003DMT400059073 | Potato | cytosol | 77.2 | 77.2 |
| Solyc11g044740.1.1 | Tomato | cytosol | 76.68 | 76.68 |
| Os12t0510900-01 | Rice | cytosol | 39.9 | 76.24 |
| KRH35659 | Soybean | cytosol | 69.95 | 75.0 |
| TraesCS5A01G103100.2 | Wheat | cytosol | 80.31 | 65.96 |
| GSMUA_Achr8P25860_001 | Banana | cytosol | 60.1 | 57.43 |
| GSMUA_Achr10P... | Banana | cytosol | 55.96 | 56.84 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 55.96 | 56.84 |
| GSMUA_Achr9P18250_001 | Banana | cytosol | 60.62 | 56.8 |
| GSMUA_Achr1P03020_001 | Banana | cytosol | 50.26 | 54.49 |
| GSMUA_Achr2P18580_001 | Banana | cytosol | 49.74 | 51.61 |
| GSMUA_Achr4P29420_001 | Banana | cytosol | 53.37 | 51.24 |
| GSMUA_Achr2P11440_001 | Banana | cytosol | 51.3 | 49.5 |
| GSMUA_Achr11P... | Banana | cytosol | 49.74 | 48.0 |
| GSMUA_Achr5P20680_001 | Banana | cytosol | 49.74 | 47.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P31070_001 | EnsemblPlants:GSMUA_Achr8T31070_001 | EnsemblPlantsGene:GSMUA_Achr8G31070_001 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF35 | PFAM:PF00412 |
| PFscan:PS50023 | ScanProsite:PS00478 | SEG:seg | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI0002948843 |
| UniProt:M0TV59 | MapMan:15.5.41 | : | : | : | : |
Description
Pollen-specific protein SF3 [Source:GMGC_GENE;Acc:GSMUA_Achr8G31070_001]
Coordinates
chr8:+:32864016..32866066
Molecular Weight (calculated)
21495.6 Da
IEP (calculated)
8.535
GRAVY (calculated)
-0.496
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFQGTTTKC TACDKTVYLV DKLTADNRIY HKACFRCHHC KGTLKLGNYN SFEGVLYCRP HFDQLFKMTG SLDKSFEGTP KIVKPEKHVE NENASKVSSA
101: FAGTREKCVG CNKTVYPIER VTVNGTAYHK SCFKCSRGGC VISPSNYIAH EGRLYCKHHH IQLFKEKGNY SQLENGEEKI SCEATACAEA SAA
101: FAGTREKCVG CNKTVYPIER VTVNGTAYHK SCFKCSRGGC VISPSNYIAH EGRLYCKHHH IQLFKEKGNY SQLENGEEKI SCEATACAEA SAA
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.