Factsheet for GSMUA_Achr10P13910_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P13160_001
GSMUA_Achr4P23050_001
GSMUA_Achr4P28300_001
GSMUA_Achr4P32070_001
GSMUA_Achr5P02100_001
GSMUA_Achr6P31690_001
GSMUA_Achr7P00850_001
GSMUA_Achr9P09830_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39900.1	GSMUA_Achr2P13160_001	AT4G19700.1	21798944
AT2G39900.1	GSMUA_Achr4P23050_001	AT4G19700.1	21798944
AT2G39900.1	GSMUA_Achr4P28300_001	AT4G19700.1	21798944
AT2G39900.1	GSMUA_Achr4P32070_001	AT4G19700.1	21798944
AT2G39900.1	GSMUA_Achr5P02100_001	AT4G19700.1	21798944
AT2G39900.1	GSMUA_Achr6P31690_001	AT4G19700.1	21798944
AT2G39900.1	GSMUA_Achr7P00850_001	AT4G19700.1	21798944
AT2G39900.1	GSMUA_Achr9P09830_001	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P14980_001	Banana	cytosol	98.42	98.42
VIT_13s0019g03280.t01	Wine grape	cytosol	85.79	86.24
KRH15005	Soybean	cytosol	82.11	82.54
PGSC0003DMT400069763	Potato	cytosol	82.11	82.54
Solyc05g052780.2.1	Tomato	cytosol	82.11	82.54
KRG97787	Soybean	cytosol	83.16	79.8
KRH31081	Soybean	cytosol	83.16	79.0
Os03t0266100-01	Rice	plasma membrane	79.47	77.04
Bra005003.1-P	Field mustard	cytosol	79.47	75.88
EER95125	Sorghum	cytosol	78.42	75.63
CDY60999	Canola	cytosol	79.47	75.5
CDY20498	Canola	cytosol	79.47	75.5
CDX74822	Canola	cytosol	79.47	75.5
Zm00001d028550_P001	Maize	extracellular, mitochondrion	78.42	75.25
CDY27267	Canola	cytosol	78.95	74.63
CDX72203	Canola	cytosol	78.95	74.63
Bra007189.1-P	Field mustard	cytosol	78.42	74.13
TraesCS4B01G212600.1	Wheat	cytosol	77.89	72.55
TraesCS4D01G213600.1	Wheat	cytosol	77.89	72.55
AT2G39900.1	Thale cress	cytosol	75.26	71.5
GSMUA_Achr1P03020_001	Banana	cytosol	65.79	70.22
GSMUA_Achr4P29420_001	Banana	cytosol	69.47	65.67
AT3G55770.7	Thale cress	cytosol	80.0	65.24
GSMUA_Achr2P11440_001	Banana	cytosol	67.37	64.0
GSMUA_Achr2P18580_001	Banana	cytosol	61.58	62.9
GSMUA_Achr11P...	Banana	cytosol	65.26	62.0
GSMUA_Achr5P20680_001	Banana	cytosol	63.16	59.7
GSMUA_Achr1P22510_001	Banana	cytosol	57.89	58.82
CDY02959	Canola	mitochondrion	79.47	56.13
GSMUA_Achr8P31070_001	Banana	cytosol	56.84	55.96
CDX76073	Canola	mitochondrion	79.47	55.93
GSMUA_Achr2P06650_001	Banana	cytosol	54.74	53.33
Bra014721.1-P	Field mustard	cytosol, mitochondrion	79.47	48.55
GSMUA_Achr9P18250_001	Banana	cytosol	50.0	46.12
GSMUA_Achr8P25860_001	Banana	cytosol	48.95	46.04
KRH73124	Soybean	cytosol	40.53	45.83

Protein Annotations

EnsemblPlants:GSMUA_Achr10P13910_001	EnsemblPlants:GSMUA_Achr10T13910_001	EnsemblPlantsGene:GSMUA_Achr10G13910_001	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF28	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI000294CDE6	UniProt:M0RI17
MapMan:15.5.41	:	:	:	:	:

Description

Pollen-specific protein SF3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G13910_001]

Coordinates

chr10:+:22351648..22355750

Molecular Weight (calculated)

20938.0 Da

IEP (calculated)

8.904

GRAVY (calculated)

-0.403

Length

190 amino acids

Sequence
(BLAST)

001: MAFNFTGTQQ KCKACDKTVY LMDQLTADGV VFHKSCFKCN HCKGTLTLST YSSMEGVLYC KPHFEQLFKE SGNFNKNFQS PAKSAEKAPE LTRSTSKAAS
101: MFSGTQEKCA TCTKTAYPLE KVTVEGQAYH KSCFKCSHGG CSITPSNYAA LEGILYCKHH FSQLFKEKGS YNHLIKSASI KRAAATAPDL

Best Arabidopsis Sequence Match ( AT3G55770.3 )
(BLAST)

001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES

Arabidopsis Description

GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.