CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27267	Canola	cytosol	99.5	99.5
Bra007189.1-P	Field mustard	cytosol	99.0	99.0
CDX74822	Canola	cytosol	87.56	88.0
CDY20498	Canola	cytosol	87.56	88.0
CDY60999	Canola	cytosol	86.07	86.5
VIT_13s0019g03280.t01	Wine grape	cytosol	79.1	84.13
Solyc05g052780.2.1	Tomato	cytosol	77.11	82.01
PGSC0003DMT400069763	Potato	cytosol	77.11	82.01
KRG97787	Soybean	cytosol	80.6	81.82
KRH15005	Soybean	cytosol	75.12	79.89
KRH31081	Soybean	cytosol	79.1	79.5
AT3G55770.7	Thale cress	cytosol	92.04	79.4
GSMUA_Achr6P14980_001	Banana	cytosol	74.63	78.95
GSMUA_Achr10P...	Banana	cytosol	74.63	78.95
CDY02959	Canola	mitochondrion	98.01	73.23
Os03t0266100-01	Rice	plasma membrane	71.14	72.96
CDX76073	Canola	mitochondrion	97.51	72.59
EER95125	Sorghum	cytosol	70.15	71.57
Zm00001d028550_P001	Maize	extracellular, mitochondrion	70.15	71.21
TraesCS4B01G212600.1	Wheat	cytosol	70.65	69.61
TraesCS4D01G213600.1	Wheat	cytosol	70.15	69.12
CDX86962	Canola	cytosol	38.31	56.2
CDY45697	Canola	cytosol	50.25	55.8
CDY20647	Canola	cytosol	51.74	55.03
CDY31040	Canola	cytosol	51.24	54.5
CDX89105	Canola	cytosol	56.72	54.03
CDX94916	Canola	cytosol	50.75	53.97
CDX93448	Canola	cytosol	50.75	53.68
CDY38028	Canola	cytosol	54.73	53.66
CDY01571	Canola	cytosol	54.23	53.17
CDY56926	Canola	cytosol	55.72	52.83
CDY15152	Canola	cytosol	53.73	52.68
CDX90059	Canola	cytosol	53.73	52.68
CDX71757	Canola	cytosol	56.22	52.31
CDY48936	Canola	cytosol	56.72	52.29
CDY27358	Canola	cytosol	59.2	51.74
CDY37066	Canola	cytosol	58.71	51.53
CDX74767	Canola	cytosol	57.71	50.66
CDY18899	Canola	cytosol	56.72	50.22
CDX95666	Canola	cytosol	54.23	47.81
CDX83389	Canola	cytosol	53.73	47.79
CDY68273	Canola	cytosol	53.73	47.79
KRH73124	Soybean	cytosol	38.81	46.43

Protein Annotations

EnsemblPlants:CDX72203	EnsemblPlantsGene:GSBRNA2T00156037001	Gene3D:2.10.110.10	GO:A0A078CB20	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF28	PFAM:PF00412
PFscan:PS50023	ProteinID:CDX72203	ProteinID:CDX72203.1	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI0004EE6D37	MapMan:15.5.41	:	:	:

Description

BnaC08g26710D

Coordinates

chrLK031795:-:2977343..2978865

Molecular Weight (calculated)

21936.1 Da

IEP (calculated)

9.145

GRAVY (calculated)

-0.387

Length

201 amino acids

Sequence
(BLAST)

001: MSSFTGTQQK CKACEKTVYP VELLSADGVS YHKSCFKCSH CKSRLQLSRY SSMEGVLYCK PHYEQLFKES GSFTKNFQSP VKPAAEKSSP ELTRTPSRVA
101: GMFSGTQEKC ATCSKTVYPI EKVTVESQTY HKSCFKCSHG GCPISPSNYA ALEGILYCKH HFAQLFKEKG SYNHLIKSAS IKRSAAAAVA AGTPAAAVPE
201: S

Best Arabidopsis Sequence Match ( AT3G55770.3 )
(BLAST)

001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES

Arabidopsis Description

GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.