CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89105	Canola	cytosol	86.19	73.93
AT3G61230.1	Thale cress	cytosol	86.74	73.71
CDY56926	Canola	cytosol	86.19	73.58
CDX71757	Canola	cytosol	86.19	72.22
CDY48936	Canola	cytosol	85.64	71.1
CDY37066	Canola	cytosol	81.22	64.19
CDY27358	Canola	cytosol	81.22	63.91
CDY18899	Canola	cytosol	78.45	62.56
CDX74767	Canola	cytosol	78.45	62.01
KRH48190	Soybean	cytosol	71.27	61.43
KRH65108	Soybean	cytosol	69.06	60.68
CDX83389	Canola	cytosol	75.14	60.18
CDY68273	Canola	cytosol	75.14	60.18
CDX90059	Canola	cytosol	67.4	59.51
CDY15152	Canola	cytosol	67.4	59.51
CDX95666	Canola	cytosol	74.59	59.21
VIT_15s0046g03370.t01	Wine grape	cytosol	70.72	58.18
CDY38028	Canola	cytosol	65.75	58.05
CDX86962	Canola	cytosol	43.65	57.66
CDY01571	Canola	cytosol	65.19	57.56
KRH00704	Soybean	cytosol	67.96	56.94
Solyc10g017520.2.1	Tomato	cytosol	65.75	56.13
PGSC0003DMT400026590	Potato	cytosol	65.75	56.13
KRH40492	Soybean	cytosol	67.4	55.71
PGSC0003DMT400000453	Potato	cytosol	65.75	53.85
Solyc01g094320.2.1	Tomato	cytosol	65.75	53.36
CDY20498	Canola	cytosol	56.91	51.5
CDX74822	Canola	cytosol	56.91	51.5
CDY60999	Canola	cytosol	55.8	50.5
CDX72203	Canola	cytosol	55.8	50.25
CDY27267	Canola	cytosol	55.8	50.25
PGSC0003DMT400055738	Potato	cytosol	62.98	50.22
Solyc05g049870.2.1	Tomato	cytosol	62.98	50.0
CDY20647	Canola	cytosol	41.99	40.21
CDY31040	Canola	cytosol	41.44	39.68
CDX93448	Canola	cytosol	41.44	39.47
CDX94916	Canola	cytosol	40.88	39.15
CDY02959	Canola	mitochondrion	56.91	38.29
CDX76073	Canola	mitochondrion	55.8	37.41

Protein Annotations

EnsemblPlants:CDY45697	EnsemblPlantsGene:GSBRNA2T00082489001	Gene3D:2.10.110.10	GO:A0A078I6G2	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ProteinID:CDY45697	ProteinID:CDY45697.1	ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716
UniParc:UPI0004EDC48D	UniProt:A0A078I6G2	MapMan:15.5.41	:	:	:

Description

BnaCnng13620DBnaCnng13620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6G2]

Coordinates

chrLK032633:-:146292..147005

Molecular Weight (calculated)

20666.7 Da

IEP (calculated)

9.147

GRAVY (calculated)

-0.761

Length

181 amino acids

Sequence
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLMTLEGMPY HKSCFRCSHC KAHFEQLFKE SGNFSKNFQT AGKTEKSNEM TRPPSKLSSF FSGTQDKCAA CKKTVYPLEK
101: MTMEGESYHK ACFRCAHSGC PLTHSSYAAL NGILYCKVHF SQLFLEKGNY NHVLQAAANH RRTPEEDKTQ PNENKKKPYR R

Best Arabidopsis Sequence Match ( AT1G01780.1 )
(BLAST)

001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES

Arabidopsis Description

PLIM2BLIM domain-containing protein PLIM2b [Source:UniProtKB/Swiss-Prot;Acc:Q1ECF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.