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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400026590 Potato cytosol 98.58 98.58
Solyc01g094320.2.1 Tomato cytosol 78.3 74.44
Solyc05g049870.2.1 Tomato cytosol 77.83 72.37
CDX86962 Canola cytosol 45.28 70.07
VIT_15s0046g03370.t01 Wine grape cytosol 72.17 69.55
CDY38028 Canola cytosol 64.62 66.83
Bra032650.1-P Field mustard cytosol 64.62 66.83
AT1G01780.1 Thale cress cytosol 64.62 66.83
KRH65108 Soybean cytosol 64.62 66.5
Bra033233.1-P Field mustard cytosol 64.15 66.34
CDX90059 Canola cytosol 64.15 66.34
CDY01571 Canola cytosol 64.15 66.34
CDY15152 Canola cytosol 64.15 66.34
Bra014447.1-P Field mustard cytosol 65.57 65.88
CDX89105 Canola cytosol 65.57 65.88
CDY45697 Canola cytosol 56.13 65.75
CDX71757 Canola cytosol 66.51 65.28
KRH48190 Soybean cytosol 64.62 65.24
CDY56926 Canola cytosol 65.09 65.09
Solyc05g052780.2.1 Tomato cytosol 58.02 65.08
Bra007586.1-P Field mustard cytosol 65.57 64.06
CDY48936 Canola cytosol 65.57 63.76
AT2G45800.1 Thale cress cytosol 66.98 62.83
AT3G61230.1 Thale cress cytosol 62.74 62.44
KRH40492 Soybean cytosol 63.68 61.64
Bra039313.1-P Field mustard cytosol 66.04 61.14
KRH00704 Soybean cytosol 62.26 61.11
CDY27358 Canola cytosol 66.04 60.87
CDY37066 Canola cytosol 65.57 60.7
CDY18899 Canola cytosol 64.62 60.35
CDX74767 Canola cytosol 65.09 60.26
Bra004939.1-P Field mustard cytosol 65.09 60.26
CDY68273 Canola cytosol 62.74 58.85
CDX83389 Canola cytosol 62.74 58.85
Bra000404.1-P Field mustard cytosol 62.26 58.41
CDX95666 Canola cytosol 62.74 58.33
Solyc08g080740.2.1 Tomato cytosol 49.06 53.61
Solyc08g007940.2.1 Tomato cytosol 51.89 53.4
Solyc06g071310.2.1 Tomato cytosol 42.92 50.84
Solyc03g114000.2.1 Tomato cytosol 44.34 49.74
Solyc11g044740.1.1 Tomato cytosol 43.87 48.19
Solyc12g088320.1.1 Tomato cytosol 41.98 47.59
Solyc04g077780.2.1 Tomato cytosol 41.98 46.11
Protein Annotations
EnsemblPlants:Solyc10g017520.2.1EnsemblPlantsGene:Solyc10g017520.2Gene3D:2.10.110.10GO:GO:0003674GO:GO:0005488GO:GO:0046872
InterPro:IPR001781InterPro:Znf_LIMPANTHER:PTHR24206PANTHER:PTHR24206:SF22PFAM:PF00412PFscan:PS50023
ScanProsite:PS00478SEG:segSMART:SM00132SUPFAM:SSF57716UniParc:UPI000276C392UniProt:K4CYN0
MapMan:15.5.41:::::
Description
No Description!
Coordinates
chr10:+:5491430..5493891
Molecular Weight (calculated)
23609.8 Da
IEP (calculated)
6.333
GRAVY (calculated)
-0.534
Length
212 amino acids
Sequence
(BLAST)
001: MSFTGTLDKC KACDKTVYFV DLLSADGITY HKSCFKCTHC KGTLVMSNYS SMDGVLYCKT HFEQLFKECG NFSKNFQTSP KPDKENALAR TPSKLSAMFS
101: GTQDKCAACT KTVYPLEKVT MEGESFHKSC FKCAHGGCPL THATYASLDG ILYCKHHFAQ LFMEKGTYQH VLEAANNKKN ADQAAAIEVV EDEATTTDEQ
201: PEKEPHEEES QE
Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)
001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES
Arabidopsis Description
PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.