Factsheet for Bra039313.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37066	Canola	cytosol	98.25	98.25
CDY27358	Canola	cytosol	98.25	97.83
Bra004939.1-P	Field mustard	cytosol	92.14	92.14
AT2G45800.1	Thale cress	cytosol	83.84	84.96
Bra000404.1-P	Field mustard	cytosol	81.22	82.3
Bra014447.1-P	Field mustard	cytosol	71.18	77.25
Bra007586.1-P	Field mustard	cytosol	71.62	75.58
Bra033233.1-P	Field mustard	cytosol	63.76	71.22
Bra032650.1-P	Field mustard	cytosol	62.88	70.24
KRH65108	Soybean	cytosol	62.01	68.93
KRH48190	Soybean	cytosol	61.57	67.14
Solyc10g017520.2.1	Tomato	cytosol	61.14	66.04
PGSC0003DMT400026590	Potato	cytosol	61.14	66.04
KRH00704	Soybean	cytosol	60.7	64.35
PGSC0003DMT400000453	Potato	cytosol	62.01	64.25
Solyc01g094320.2.1	Tomato	cytosol	62.01	63.68
VIT_15s0046g03370.t01	Wine grape	cytosol	61.14	63.64
KRH40492	Soybean	cytosol	59.83	62.56
Bra026940.1-P	Field mustard	cytosol	24.45	60.87
Bra005003.1-P	Field mustard	cytosol	52.4	60.3
PGSC0003DMT400055738	Potato	cytosol	58.95	59.47
Solyc05g049870.2.1	Tomato	cytosol	58.52	58.77
Bra007189.1-P	Field mustard	cytosol	51.09	58.21
Bra018454.1-P	Field mustard	cytosol	39.74	48.15
Bra019956.1-P	Field mustard	cytosol	38.86	46.84
Bra014721.1-P	Field mustard	cytosol, mitochondrion	50.66	37.3

Protein Annotations

EnsemblPlants:Bra039313.1	EnsemblPlants:Bra039313.1-P	EnsemblPlantsGene:Bra039313	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002544450
UniProt:M4FDZ2	MapMan:15.5.41	:	:	:	:

Description

AT2G45800 (E=6e-107) | LIM domain-containing protein

Coordinates

chrA04:-:18649475..18650526

Molecular Weight (calculated)

25132.2 Da

IEP (calculated)

6.495

GRAVY (calculated)

-0.633

Length

229 amino acids

Sequence
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCSHC NGTLQMTTYS SMDGVLYCKT HFEQLFKESG NFSKNFQTGK TEKSNDQMTR APSKLSSFFS
101: GTQDKCASCH KTVYPLEKVN MEGECYHKTC FKCAHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR TASSGASTPP SDDHKPEDNA
201: AIPEGEAGGE EEAVPEAAAG EETEPVAES

Best Arabidopsis Sequence Match ( AT2G45800.1 )
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCTHC KGTLVISNYS SMDGVLYCKP HFEQLFKESG NYSKNFQAGK TEKPNDHLTR TPSKLSSFFS
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES

Arabidopsis Description

PLIM2ALIM domain-containing protein PLIM2a [Source:UniProtKB/Swiss-Prot;Acc:O80839]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.