CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37066	Canola	cytosol	98.26	98.69
Bra039313.1-P	Field mustard	cytosol	97.83	98.25
CDX74767	Canola	cytosol	90.87	91.27
CDY18899	Canola	cytosol	90.0	91.19
AT2G45800.1	Thale cress	cytosol	83.91	85.4
CDX95666	Canola	cytosol	83.04	83.77
CDY68273	Canola	cytosol	81.74	83.19
CDX83389	Canola	cytosol	81.74	83.19
CDY45697	Canola	cytosol	63.91	81.22
CDY56926	Canola	cytosol	72.17	78.3
CDX89105	Canola	cytosol	70.87	77.25
CDX71757	Canola	cytosol	70.87	75.46
CDY48936	Canola	cytosol	71.3	75.23
CDX90059	Canola	cytosol	63.91	71.71
CDY15152	Canola	cytosol	63.91	71.71
CDY38028	Canola	cytosol	63.04	70.73
CDY01571	Canola	cytosol	62.61	70.24
CDX86962	Canola	cytosol	41.74	70.07
KRH65108	Soybean	cytosol	61.74	68.93
KRH48190	Soybean	cytosol	60.87	66.67
PGSC0003DMT400026590	Potato	cytosol	60.87	66.04
Solyc10g017520.2.1	Tomato	cytosol	60.87	66.04
PGSC0003DMT400000453	Potato	cytosol	62.17	64.71
Solyc01g094320.2.1	Tomato	cytosol	62.17	64.13
VIT_15s0046g03370.t01	Wine grape	cytosol	61.3	64.09
KRH00704	Soybean	cytosol	60.0	63.89
KRH40492	Soybean	cytosol	59.57	62.56
CDY20498	Canola	cytosol	52.61	60.5
CDX74822	Canola	cytosol	52.61	60.5
CDY60999	Canola	cytosol	52.17	60.0
PGSC0003DMT400055738	Potato	cytosol	59.13	59.91
Solyc05g049870.2.1	Tomato	cytosol	58.7	59.21
CDY27267	Canola	cytosol	51.74	59.2
CDX72203	Canola	cytosol	51.74	59.2
CDY20647	Canola	cytosol	40.0	48.68
CDY31040	Canola	cytosol	39.57	48.15
CDX94916	Canola	cytosol	39.13	47.62
CDX93448	Canola	cytosol	38.7	46.84
CDY02959	Canola	mitochondrion	51.74	44.24
CDX76073	Canola	mitochondrion	51.3	43.7

Protein Annotations

EnsemblPlants:CDY27358	EnsemblPlantsGene:GSBRNA2T00037295001	Gene3D:2.10.110.10	GO:A0A078GRV8	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ProteinID:CDY27358	ProteinID:CDY27358.1	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI0004EDD072	UniProt:A0A078GRV8	MapMan:15.5.41	:	:

Description

BnaC04g50470DBnaC04g50470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRV8]

Coordinates

chrLK032203:+:234938..236282

Molecular Weight (calculated)

25173.2 Da

IEP (calculated)

6.494

GRAVY (calculated)

-0.648

Length

230 amino acids

Sequence
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCSHC NGTLQMSTYS SMDGVLYCKT HFEQLFKESG NFSKNFQTGK TEKSNDQMTR APSKLSSFFS
101: GTQDKCASCH KTVYPLEKVN MEGECYHKTC FKCAHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR TASSGASTPP SDDHKPEDNA
201: AIPEGEAGGE EEAVPEAADA GGEPEPVSES

Best Arabidopsis Sequence Match ( AT2G45800.1 )
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCTHC KGTLVISNYS SMDGVLYCKP HFEQLFKESG NYSKNFQAGK TEKPNDHLTR TPSKLSSFFS
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES

Arabidopsis Description

PLIM2ALIM domain-containing protein PLIM2a [Source:UniProtKB/Swiss-Prot;Acc:O80839]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.