Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004939.1-P | Field mustard | cytosol | 86.73 | 85.59 |
| CDX74767 | Canola | cytosol | 86.73 | 85.59 |
| CDY18899 | Canola | cytosol | 85.4 | 85.02 |
| CDY27358 | Canola | cytosol | 85.4 | 83.91 |
| CDY37066 | Canola | cytosol | 84.96 | 83.84 |
| Bra039313.1-P | Field mustard | cytosol | 84.96 | 83.84 |
| CDX95666 | Canola | cytosol | 81.86 | 81.14 |
| CDY68273 | Canola | cytosol | 80.53 | 80.53 |
| CDX83389 | Canola | cytosol | 80.53 | 80.53 |
| Bra000404.1-P | Field mustard | cytosol | 80.09 | 80.09 |
| AT3G61230.1 | Thale cress | cytosol | 71.24 | 75.59 |
| AT1G01780.1 | Thale cress | cytosol | 65.04 | 71.71 |
| KRH65108 | Soybean | cytosol | 62.39 | 68.45 |
| PGSC0003DMT400026590 | Potato | cytosol | 62.83 | 66.98 |
| Solyc10g017520.2.1 | Tomato | cytosol | 62.83 | 66.98 |
| KRH48190 | Soybean | cytosol | 61.5 | 66.19 |
| VIT_15s0046g03370.t01 | Wine grape | cytosol | 61.95 | 63.64 |
| PGSC0003DMT400000453 | Potato | cytosol | 61.5 | 62.9 |
| Solyc01g094320.2.1 | Tomato | cytosol | 61.95 | 62.78 |
| KRH00704 | Soybean | cytosol | 58.85 | 61.57 |
| KRH40492 | Soybean | cytosol | 58.85 | 60.73 |
| AT2G39900.1 | Thale cress | cytosol | 53.54 | 60.5 |
| PGSC0003DMT400055738 | Potato | cytosol | 58.85 | 58.59 |
| Solyc05g049870.2.1 | Tomato | cytosol | 58.85 | 58.33 |
| AT3G55770.7 | Thale cress | cytosol | 53.98 | 52.36 |
| AT1G10200.1 | Thale cress | cytosol | 40.27 | 47.89 |
Protein Annotations
| MapMan:15.5.41 | Gene3D:2.10.110.10 | EntrezGene:819188 | UniProt:A0A178VQD3 | ProteinID:AAC28544.1 | ProteinID:AEC10602.1 |
| ProteinID:AEC10603.1 | EMBL:AK118044 | ArrayExpress:AT2G45800 | EnsemblPlantsGene:AT2G45800 | RefSeq:AT2G45800 | TAIR:AT2G45800 |
| RefSeq:AT2G45800-TAIR-G | EnsemblPlants:AT2G45800.1 | TAIR:AT2G45800.1 | Unigene:At.48595 | EMBL:BT005586 | GO:GO:0003674 |
| GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046872 |
| GO:GO:0051015 | GO:GO:0051017 | InterPro:IPR001781 | RefSeq:NP_001031545.1 | RefSeq:NP_182104.1 | UniProt:O80839 |
| ProteinID:OAP08670.1 | PFAM:PF00412 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00478 | PFscan:PS50023 |
| PANTHER:PTHR24206 | PANTHER:PTHR24206:SF22 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI000000C6BF | InterPro:Znf_LIM |
| SEG:seg | : | : | : | : | : |
Description
PLIM2ALIM domain-containing protein PLIM2a [Source:UniProtKB/Swiss-Prot;Acc:O80839]
Coordinates
chr2:-:18857941..18859278
Molecular Weight (calculated)
24944.0 Da
IEP (calculated)
6.921
GRAVY (calculated)
-0.667
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCTHC KGTLVISNYS SMDGVLYCKP HFEQLFKESG NYSKNFQAGK TEKPNDHLTR TPSKLSSFFS
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.