Factsheet for PGSC0003DMT400026590

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g017520.2.1	Tomato	cytosol	98.58	98.58
PGSC0003DMT400000453	Potato	cytosol	77.36	74.21
PGSC0003DMT400055738	Potato	cytosol	77.36	72.25
VIT_15s0046g03370.t01	Wine grape	cytosol	72.17	69.55
CDX86962	Canola	cytosol	44.81	69.34
AT1G01780.1	Thale cress	cytosol	64.62	66.83
CDY38028	Canola	cytosol	64.62	66.83
Bra032650.1-P	Field mustard	cytosol	64.62	66.83
KRH65108	Soybean	cytosol	64.62	66.5
Bra014447.1-P	Field mustard	cytosol	66.04	66.35
CDX89105	Canola	cytosol	66.04	66.35
Bra033233.1-P	Field mustard	cytosol	64.15	66.34
CDY15152	Canola	cytosol	64.15	66.34
CDY01571	Canola	cytosol	64.15	66.34
CDX90059	Canola	cytosol	64.15	66.34
CDX71757	Canola	cytosol	67.45	66.2
CDY56926	Canola	cytosol	66.04	66.04
CDY45697	Canola	cytosol	56.13	65.75
KRH48190	Soybean	cytosol	64.62	65.24
PGSC0003DMT400069763	Potato	cytosol	58.02	65.08
Bra007586.1-P	Field mustard	cytosol	66.51	64.98
CDY48936	Canola	cytosol	66.51	64.68
AT3G61230.1	Thale cress	cytosol	63.68	63.38
AT2G45800.1	Thale cress	cytosol	66.98	62.83
KRH40492	Soybean	cytosol	64.15	62.1
KRH00704	Soybean	cytosol	62.74	61.57
Bra039313.1-P	Field mustard	cytosol	66.04	61.14
CDY27358	Canola	cytosol	66.04	60.87
CDY37066	Canola	cytosol	65.57	60.7
CDY18899	Canola	cytosol	64.62	60.35
Bra004939.1-P	Field mustard	cytosol	65.09	60.26
CDX74767	Canola	cytosol	65.09	60.26
CDY68273	Canola	cytosol	63.21	59.29
CDX83389	Canola	cytosol	63.21	59.29
Bra000404.1-P	Field mustard	cytosol	62.74	58.85
CDX95666	Canola	cytosol	63.21	58.77
PGSC0003DMT400014797	Potato	cytosol	42.45	53.57
PGSC0003DMT400083108	Potato	cytosol	43.4	51.4
PGSC0003DMT400062907	Potato	cytosol	44.34	49.74
PGSC0003DMT400030205	Potato	cytosol	42.45	48.13
PGSC0003DMT400059073	Potato	cytosol	43.4	47.67
PGSC0003DMT400027522	Potato	cytosol	41.51	45.6
PGSC0003DMT400007915	Potato	cytosol	42.92	40.81

Protein Annotations

EnsemblPlants:PGSC0003DMT400026590	EnsemblPlantsGene:PGSC0003DMG400010269	EntrezGene:102604807	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	PGSC:PGSC0003DMG400010269	RefSeq:XP_006341718.1	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI000296A68A	UniProt:M1ANE4	MapMan:15.5.41	:	:

Description

LIM domain protein 2b [Source:PGSC_GENE;Acc:PGSC0003DMG400010269]

Coordinates

chr10:+:38879686..38882502

Molecular Weight (calculated)

23623.8 Da

IEP (calculated)

6.494

GRAVY (calculated)

-0.572

Length

212 amino acids

Sequence
(BLAST)

001: MSFTGTLDKC KACDKTVYFV DLLSADGITY HKSCFKCTHC KGTLVMSNYS SMDGVLYCKT HFEQLFKECG NFSKNFQTSP KPDKENALAR TPSKLSAMFS
101: GTQDKCAACT KTVYPLEKVT MEGESFHKSC FKCAHGGCPL THATYASLDG ILYCKHHFAQ LFMEKGTYQH VLEAANNKKN ADQAAANEVV ENEATTTEEQ
201: PEKEPHEEES QE

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.