Factsheet for PGSC0003DMT400014797

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007940.2.1	Tomato	cytosol	95.83	78.16
GSMUA_Achr1P03020_001	Banana	cytosol	52.98	50.0
PGSC0003DMT400069763	Potato	cytosol	54.76	48.68
EES05836	Sorghum	cytosol	57.74	48.5
GSMUA_Achr4P29420_001	Banana	cytosol	57.74	48.26
Os02t0641000-00	Rice	mitochondrion	43.45	47.4
EES12556	Sorghum	cytosol	57.14	47.29
Zm00001d051262_P001	Maize	cytosol	57.74	46.86
VIT_02s0025g03980.t01	Wine grape	cytosol	58.93	46.05
GSMUA_Achr2P11440_001	Banana	cytosol	54.76	46.0
Os04t0532500-01	Rice	plasma membrane	54.76	45.77
GSMUA_Achr2P18580_001	Banana	cytosol	50.6	45.7
Zm00001d002844_P003	Maize	cytosol	55.95	45.63
TraesCS6B01G265100.1	Wheat	cytosol	55.95	45.41
Zm00001d025926_P001	Maize	cytosol	55.36	45.37
KRH59846	Soybean	cytosol	60.12	45.09
GSMUA_Achr11P...	Banana	cytosol	53.57	45.0
GSMUA_Achr5P20680_001	Banana	cytosol	53.57	44.78
KRH41147	Soybean	cytosol	60.71	44.74
TraesCS6A01G236600.1	Wheat	cytosol	55.95	44.34
TraesCS2A01G370800.1	Wheat	cytosol	53.57	44.34
TraesCS6D01G219200.1	Wheat	cytosol	55.95	44.13
TraesCS2D01G367100.1	Wheat	cytosol	53.57	43.9
TraesCS2B01G388000.1	Wheat	cytosol	53.57	43.69
PGSC0003DMT400007915	Potato	cytosol	57.74	43.5
PGSC0003DMT400026590	Potato	cytosol	53.57	42.45
TraesCS1A01G173600.1	Wheat	cytosol	50.0	42.0
PGSC0003DMT400000453	Potato	cytosol	54.76	41.63
TraesCS1D01G165200.1	Wheat	cytosol	50.6	41.06
TraesCS1B01G190800.1	Wheat	cytosol	50.0	40.38
PGSC0003DMT400083108	Potato	cytosol	42.86	40.22
Zm00001d017382_P001	Maize	cytosol	58.33	39.68
PGSC0003DMT400055738	Potato	cytosol	52.98	39.21
PGSC0003DMT400059073	Potato	cytosol	44.05	38.34
PGSC0003DMT400062907	Potato	cytosol	42.26	37.57
PGSC0003DMT400030205	Potato	cytosol	40.48	36.36
HORVU6Hr1G060580.5	Barley	plastid	44.05	35.92
PGSC0003DMT400027522	Potato	cytosol	41.07	35.75
HORVU5Hr1G031550.3	Barley	cytosol	19.05	32.32

Protein Annotations

EnsemblPlants:PGSC0003DMT400014797	EnsemblPlantsGene:PGSC0003DMG400005775	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF54	PFAM:PF00412	PFscan:PS50023
PGSC:PGSC0003DMG400005775	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI000296A88A
UniProt:M1A4W4	MapMan:15.5.41	:	:	:	:

Description

Pollen-specific protein SF3 [Source:PGSC_GENE;Acc:PGSC0003DMG400005775]

Coordinates

chr8:+:4757741..4760615

Molecular Weight (calculated)

18373.3 Da

IEP (calculated)

7.642

GRAVY (calculated)

-0.630

Length

168 amino acids

Sequence
(BLAST)

001: MSSFGTQTKC KACDKTVYAA EVISAGGVNY HNTCFRCSHC NGRLANRSPS KLSSLFSGTQ EKCASCKKTV YPLEKVTVDG EFYHQSCFKC AHGGCKLTTS
101: SYAALDGLVY CKPHFSQLFK EKGSYNHLTT STNKKNHSVD EQEEGSTTTT TTTDVDEPPQ PPVEETQV

Best Arabidopsis Sequence Match ( AT2G39900.1 )
(BLAST)

001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES

Arabidopsis Description

WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.