Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g114000.2.1 | Tomato | cytosol | 97.88 | 97.88 |
| PGSC0003DMT400083108 | Potato | cytosol | 81.48 | 86.03 |
| KRH54438 | Soybean | cytosol | 76.19 | 75.0 |
| VIT_17s0000g07820.t01 | Wine grape | cytosol | 71.43 | 74.18 |
| KRH33303 | Soybean | cytosol | 21.16 | 72.73 |
| KRH63478 | Soybean | cytosol | 74.6 | 69.12 |
| KRH03352 | Soybean | cytosol | 73.55 | 66.51 |
| PGSC0003DMT400030205 | Potato | cytosol | 65.61 | 66.31 |
| PGSC0003DMT400027522 | Potato | cytosol | 66.14 | 64.77 |
| KRH57029 | Soybean | cytosol | 73.02 | 64.19 |
| PGSC0003DMT400059073 | Potato | cytosol | 64.55 | 63.21 |
| KRG90348 | Soybean | cytosol | 23.81 | 62.5 |
| PGSC0003DMT400069763 | Potato | cytosol | 52.91 | 52.91 |
| PGSC0003DMT400026590 | Potato | cytosol | 49.74 | 44.34 |
| PGSC0003DMT400014797 | Potato | cytosol | 37.57 | 42.26 |
| PGSC0003DMT400000453 | Potato | cytosol | 49.21 | 42.08 |
| PGSC0003DMT400055738 | Potato | cytosol | 49.74 | 41.41 |
| PGSC0003DMT400007915 | Potato | cytosol | 40.74 | 34.53 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400062907 | EnsemblPlantsGene:PGSC0003DMG400024481 | EntrezGene:102586458 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF35 | PFAM:PF00412 |
| PFscan:PS50023 | PGSC:PGSC0003DMG400024481 | RefSeq:XP_006345025.1 | ScanProsite:PS00478 | SMART:SM00132 | SUPFAM:SSF57716 |
| UniParc:UPI0002949397 | UniProt:M1C9R6 | MapMan:15.5.41 | : | : | : |
Description
Pollen specific LIM domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024481]
Coordinates
chr3:+:53870890..53873411
Molecular Weight (calculated)
21247.4 Da
IEP (calculated)
9.419
GRAVY (calculated)
-0.649
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MATFGGTTQK CKACEKTVYL VDQLKADSRV YHKSCFRCNH CKGTLKLGNY NSYEGVLYCR PHFDQLFKMT GSLNKSFEGG PRTVKERSLD KAQAANKVSA
101: LFGGTQDKCV ACKKTVYPLE KVAVDGTSYH RPCFKCSHGG CIISPSNYVA HDHKLYCRHH HTQLFKQRGN FSHMEDHEKI KGVTENGKA
101: LFGGTQDKCV ACKKTVYPLE KVAVDGTSYH RPCFKCSHGG CIISPSNYVA HDHKLYCRHH HTQLFKQRGN FSHMEDHEKI KGVTENGKA
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.