Factsheet for PGSC0003DMT400027522

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400058821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10200.1	PGSC0003DMT400058821	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077780.2.1	Tomato	cytosol	98.45	98.45
PGSC0003DMT400030205	Potato	cytosol	86.01	88.77
VIT_18s0001g09040.t01	Wine grape	cytosol	86.53	84.77
KRH61425	Soybean	cytosol	82.9	81.63
KRH52104	Soybean	cytosol	82.38	81.12
CDY20647	Canola	cytosol	79.27	80.95
KRG88767	Soybean	cytosol	81.87	80.61
Bra018454.1-P	Field mustard	cytosol	78.76	80.42
CDY31040	Canola	cytosol	78.76	80.42
KRH05574	Soybean	cytosol	81.35	80.1
CDX94916	Canola	cytosol	78.24	79.89
AT1G10200.1	Thale cress	cytosol	78.24	79.47
CDX93448	Canola	cytosol	77.72	78.95
Bra019956.1-P	Field mustard	cytosol	77.72	78.95
PGSC0003DMT400059073	Potato	cytosol	74.61	74.61
PGSC0003DMT400083108	Potato	cytosol	67.88	73.18
PGSC0003DMT400062907	Potato	cytosol	64.77	66.14
PGSC0003DMT400069763	Potato	cytosol	51.3	52.38
PGSC0003DMT400026590	Potato	cytosol	45.6	41.51
PGSC0003DMT400014797	Potato	cytosol	35.75	41.07
PGSC0003DMT400055738	Potato	cytosol	46.63	39.65
PGSC0003DMT400000453	Potato	cytosol	45.08	39.37
PGSC0003DMT400007915	Potato	cytosol	35.75	30.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400027522	EnsemblPlantsGene:PGSC0003DMG400010609	EntrezGene:102588502	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF35	PFAM:PF00412
PFscan:PS50023	PGSC:PGSC0003DMG400010609	RefSeq:XP_015168622.1	ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716
UniParc:UPI000295E49E	UniProt:M1APS2	MapMan:15.5.41	:	:	:

Description

Transcription factor LIM [Source:PGSC_GENE;Acc:PGSC0003DMG400010609]

Coordinates

chr4:-:66918057..66920309

Molecular Weight (calculated)

21601.0 Da

IEP (calculated)

8.906

GRAVY (calculated)

-0.490

Length

193 amino acids

Sequence
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRIY HKACFRCHHC KGTLKLGNYN SFEGVLYCRP HFDQLFKQTG SLDKSFEGTP KIVKPQKLID SEKPQVAKVT
101: SMFGGTREKC FGCKNTVYPT EKVSVNGTPY HKNCFKCSHG GCVISPSNYI AHEGRLYCKH HHIQLIKEKG NLSKLEGDHQ TISAITTEVT AES

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.