CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90583
CDY09752
CDY52177
CDY64791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10200.1	CDX90583	AT4G15560.1	24104567
AT1G10200.1	CDY09752	AT4G15560.1	24104567
AT1G10200.1	CDY52177	AT4G15560.1	24104567
AT1G10200.1	CDY64791	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31040	Canola	cytosol	99.47	99.47
CDX94916	Canola	cytosol	98.94	98.94
AT1G10200.1	Thale cress	cytosol	98.41	97.89
CDX93448	Canola	cytosol	97.88	97.37
KRH61425	Soybean	cytosol	86.24	83.16
KRH52104	Soybean	cytosol	85.71	82.65
Solyc12g088320.1.1	Tomato	cytosol	80.95	81.82
KRG88767	Soybean	cytosol	84.66	81.63
PGSC0003DMT400030205	Potato	cytosol	80.42	81.28
KRH05574	Soybean	cytosol	84.13	81.12
VIT_18s0001g09040.t01	Wine grape	cytosol	83.6	80.2
PGSC0003DMT400027522	Potato	cytosol	80.95	79.27
Solyc04g077780.2.1	Tomato	cytosol	80.42	78.76
CDX74822	Canola	cytosol	56.61	53.5
CDY20498	Canola	cytosol	56.61	53.5
CDY60999	Canola	cytosol	56.08	53.0
CDY27267	Canola	cytosol	55.03	51.74
CDX72203	Canola	cytosol	55.03	51.74
CDX86962	Canola	cytosol	37.04	51.09
CDY15152	Canola	cytosol	48.68	44.88
CDY01571	Canola	cytosol	48.68	44.88
CDX90059	Canola	cytosol	48.15	44.39
CDY38028	Canola	cytosol	48.15	44.39
CDX71757	Canola	cytosol	49.74	43.52
CDX89105	Canola	cytosol	48.15	43.13
CDY56926	Canola	cytosol	48.15	42.92
CDY45697	Canola	cytosol	40.21	41.99
CDY48936	Canola	cytosol	48.15	41.74
CDX74767	Canola	cytosol	49.74	41.05
CDY18899	Canola	cytosol	49.21	40.97
CDY37066	Canola	cytosol	48.68	40.17
CDY27358	Canola	cytosol	48.68	40.0
CDX95666	Canola	cytosol	46.56	38.6
CDY68273	Canola	cytosol	46.03	38.5
CDX83389	Canola	cytosol	46.03	38.5
CDY02959	Canola	mitochondrion	54.5	38.29
CDX76073	Canola	mitochondrion	54.5	38.15

Protein Annotations

EnsemblPlants:CDY20647	EnsemblPlantsGene:GSBRNA2T00012830001	Gene3D:2.10.110.10	GO:A0A078G6Q4	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF35	PFAM:PF00412
PFscan:PS50023	ProteinID:CDY20647	ProteinID:CDY20647.1	ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716
UniParc:UPI0004EB8A1B	UniProt:A0A078G6Q4	MapMan:15.5.41	:	:	:

Description

BnaC08g14110DBnaC08g14110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6Q4]

Coordinates

chrLK032110:+:443149..444654

Molecular Weight (calculated)

20958.1 Da

IEP (calculated)

8.904

GRAVY (calculated)

-0.604

Length

189 amino acids

Sequence
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDKPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGDN AAKDKVDAA

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.