CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007586.1-P	Field mustard	cytosol	99.54	100.0
CDX71757	Canola	cytosol	95.87	96.76
CDX89105	Canola	cytosol	87.61	90.52
CDY56926	Canola	cytosol	87.61	90.09
CDY45697	Canola	cytosol	71.1	85.64
AT3G61230.1	Thale cress	cytosol	83.03	84.98
CDY18899	Canola	cytosol	75.69	72.69
CDX74767	Canola	cytosol	76.15	72.49
CDY27358	Canola	cytosol	75.23	71.3
CDY37066	Canola	cytosol	74.31	70.74
CDY68273	Canola	cytosol	72.94	70.35
CDX83389	Canola	cytosol	72.94	70.35
CDX95666	Canola	cytosol	72.94	69.74
CDX90059	Canola	cytosol	65.14	69.27
CDY15152	Canola	cytosol	65.14	69.27
CDY38028	Canola	cytosol	64.68	68.78
CDY01571	Canola	cytosol	64.22	68.29
VIT_15s0046g03370.t01	Wine grape	cytosol	68.81	68.18
CDX86962	Canola	cytosol	42.66	67.88
KRH65108	Soybean	cytosol	63.76	67.48
PGSC0003DMT400026590	Potato	cytosol	64.68	66.51
KRH48190	Soybean	cytosol	63.76	66.19
Solyc10g017520.2.1	Tomato	cytosol	63.76	65.57
KRH00704	Soybean	cytosol	64.68	65.28
KRH40492	Soybean	cytosol	64.22	63.93
PGSC0003DMT400000453	Potato	cytosol	64.68	63.8
Solyc01g094320.2.1	Tomato	cytosol	64.22	62.78
CDY20498	Canola	cytosol	54.59	59.5
CDX74822	Canola	cytosol	54.59	59.5
Solyc05g049870.2.1	Tomato	cytosol	61.93	59.21
PGSC0003DMT400055738	Potato	cytosol	61.47	59.03
CDY60999	Canola	cytosol	53.21	58.0
CDX72203	Canola	cytosol	52.29	56.72
CDY27267	Canola	cytosol	52.29	56.72
CDY20647	Canola	cytosol	41.74	48.15
CDY31040	Canola	cytosol	41.28	47.62
CDX94916	Canola	cytosol	40.83	47.09
CDX93448	Canola	cytosol	40.83	46.84
CDY02959	Canola	mitochondrion	53.21	43.12
CDX76073	Canola	mitochondrion	52.29	42.22

Protein Annotations

MapMan:15.5.41	Gene3D:2.10.110.10	GO:A0A078IFZ9	UniProt:A0A078IFZ9	EnsemblPlants:CDY48936	ProteinID:CDY48936
ProteinID:CDY48936.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00092025001	InterPro:IPR001781
PFAM:PF00412	ScanProsite:PS00478	PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI0004EE3A92	InterPro:Znf_LIM	SEG:seg	:	:

Description

BnaA09g39010DBnaA09g39010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFZ9]

Coordinates

chrLK032801:+:119522..120579

Molecular Weight (calculated)

24314.4 Da

IEP (calculated)

6.222

GRAVY (calculated)

-0.641

Length

218 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC KACDKTVYVM DLMTLEGMPY HKSCFRCSHC NGTLVISNYS SMDGVLYCKP HFEQLFKESG NFSKNFHTAG KTEKSNDVTR APSKLSSFFS
101: GTQDKCAACK KTVYPLEKIT MEGESYHKTC FRCAHGGCPL THSSYAALNG ILYCKVHFNQ LFLEKGNYNH VLAAANHKRS SEEDKTETNE EHESEANPTE
201: EEEEASGVPL EAGEEHDS

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.