Factsheet for VIT_15s0046g03370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026590	Potato	cytosol	69.55	72.17
Solyc10g017520.2.1	Tomato	cytosol	69.55	72.17
CDX71757	Canola	cytosol	70.0	71.3
CDY56926	Canola	cytosol	68.18	70.75
CDY45697	Canola	cytosol	58.18	70.72
Bra014447.1-P	Field mustard	cytosol	67.27	70.14
CDX89105	Canola	cytosol	67.27	70.14
CDY48936	Canola	cytosol	68.18	68.81
Bra007586.1-P	Field mustard	cytosol	67.73	68.66
VIT_13s0019g03280.t01	Wine grape	cytosol	58.64	68.25
KRH65108	Soybean	cytosol	63.64	67.96
CDX86962	Canola	cytosol	42.27	67.88
PGSC0003DMT400000453	Potato	cytosol	67.73	67.42
CDY38028	Canola	cytosol	62.73	67.32
KRH48190	Soybean	cytosol	64.09	67.14
AT3G61230.1	Thale cress	cytosol	65.0	67.14
KRH00704	Soybean	cytosol	65.91	67.13
KRH40492	Soybean	cytosol	66.82	67.12
CDY01571	Canola	cytosol	62.27	66.83
AT1G01780.1	Thale cress	cytosol	62.27	66.83
Bra032650.1-P	Field mustard	cytosol	62.27	66.83
Solyc01g094320.2.1	Tomato	cytosol	67.73	66.82
Bra033233.1-P	Field mustard	cytosol	61.82	66.34
CDX90059	Canola	cytosol	61.82	66.34
CDY15152	Canola	cytosol	61.82	66.34
PGSC0003DMT400055738	Potato	cytosol	68.18	66.08
Solyc05g049870.2.1	Tomato	cytosol	68.18	65.79
CDY18899	Canola	cytosol	64.09	62.11
CDX74767	Canola	cytosol	64.55	62.01
Bra004939.1-P	Field mustard	cytosol	64.55	62.01
AT2G45800.1	Thale cress	cytosol	63.64	61.95
VIT_02s0025g03980.t01	Wine grape	cytosol	60.45	61.86
CDY37066	Canola	cytosol	64.09	61.57
CDY27358	Canola	cytosol	64.09	61.3
Bra039313.1-P	Field mustard	cytosol	63.64	61.14
CDY68273	Canola	cytosol	60.45	58.85
CDX83389	Canola	cytosol	60.45	58.85
Bra000404.1-P	Field mustard	cytosol	60.0	58.41
CDX95666	Canola	cytosol	60.0	57.89
VIT_17s0000g07820.t01	Wine grape	cytosol	45.91	55.49
VIT_03s0091g01010.t01	Wine grape	cytosol	45.91	52.06
VIT_18s0001g09040.t01	Wine grape	cytosol	45.91	51.27

Protein Annotations

EntrezGene:100267125	wikigene:100267125	MapMan:15.5.41	Gene3D:2.10.110.10	UniProt:A5BP02	EMBL:AM466138
ProteinID:CAN74803	ProteinID:CAN74803.1	ProteinID:CCB62380	ProteinID:CCB62380.1	ncoils:Coil	EMBL:FN596755
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	EntrezGene:LOC100267125	wikigene:LOC100267125
PFAM:PF00412	ScanProsite:PS00478	PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI00015215D4	ArrayExpress:VIT_15s0046g03370	EnsemblPlantsGene:VIT_15s0046g03370	EnsemblPlants:VIT_15s0046g03370.t01	unigene:Vvi.20608
RefSeq:XP_002269537	RefSeq:XP_002269537.1	InterPro:Znf_LIM	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:-:19987159..19988915

Molecular Weight (calculated)

24085.1 Da

IEP (calculated)

7.049

GRAVY (calculated)

-0.590

Length

220 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC KACDKTVYVV DLLSADGASY HKTCFKCSHC KGTLVMSNYS SMDGVLYCKP HFEQLFKESG NFSKNFQTSA KPADKLNELS RAPSKLSSMF
101: SGTQDKCSAC RKTVYPLEKV TLEGESYHKS CFKCAHGGCP LTHSSYAALN GVLYCKHHFS QLFMEKGNYS HVLEAATHKK QAASNAEAEA KAEAETKAEA
201: EGEAEAEPEH DQTDQTQGQS

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.