Factsheet for VIT_03s0091g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g09040.t01	Wine grape	cytosol	83.51	82.23
GSMUA_Achr1P22510_001	Banana	cytosol	78.35	81.28
GSMUA_Achr8P31070_001	Banana	cytosol	78.87	79.27
KRH35659	Soybean	cytosol	73.2	78.89
PGSC0003DMT400059073	Potato	cytosol	76.8	77.2
Solyc11g044740.1.1	Tomato	cytosol	76.8	77.2
EES16055	Sorghum	cytosol	75.77	75.77
Zm00001d035304_P001	Maize	mitochondrion	75.77	75.38
GSMUA_Achr2P06650_001	Banana	cytosol	74.74	74.36
HORVU5Hr1G028180.1	Barley	cytosol	73.71	72.96
TraesCS5B01G107400.1	Wheat	cytosol	73.71	72.96
TraesCS5D01G115000.1	Wheat	cytosol	73.71	72.96
Zm00001d041725_P001	Maize	cytosol	73.2	72.45
VIT_17s0000g07820.t01	Wine grape	cytosol	67.53	71.98
Os12t0510900-01	Rice	cytosol	36.6	70.3
TraesCS5A01G103100.2	Wheat	cytosol	73.71	60.85
VIT_13s0019g03280.t01	Wine grape	cytosol	56.19	57.67
VIT_15s0046g03370.t01	Wine grape	cytosol	52.06	45.91
VIT_02s0025g03980.t01	Wine grape	cytosol	50.52	45.58

Protein Annotations

EntrezGene:100266902	wikigene:100266902	MapMan:15.5.41	Gene3D:2.10.110.10	ProteinID:CBI22440	ProteinID:CBI22440.3
UniProt:D7SXP0	EMBL:FN595242	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781
EntrezGene:LOC100266902	wikigene:LOC100266902	PFAM:PF00412	ScanProsite:PS00478	PFscan:PS50023	PANTHER:PTHR24206
PANTHER:PTHR24206:SF38	SMART:SM00132	SUPFAM:SSF57716	TIGR:TC56228	UniParc:UPI00015CD231	ArrayExpress:VIT_03s0091g01010
EnsemblPlantsGene:VIT_03s0091g01010	EnsemblPlants:VIT_03s0091g01010.t01	unigene:Vvi.14723	RefSeq:XP_002266499	RefSeq:XP_002266499.1	InterPro:Znf_LIM

Description

No Description!

Coordinates

chr3:+:7535063..7536574

Molecular Weight (calculated)

21770.8 Da

IEP (calculated)

8.653

GRAVY (calculated)

-0.606

Length

194 amino acids

Sequence
(BLAST)

001: MAFAGTTQKC MACEKTVYLV DRLTADNRIY HKACFRCHHC RGTLKLGNYN SFEGVLYCRP HFDQLFKRTG SLDKSFEGTP KIVKPEKTTD HSENAATNKV
101: SNMFVGTKDK CVGCNKTAYP LEKVTVNGTP YHKSCFKCTY GGCTISPSNY IAHEGKLYCK HHHIQLFKEK GNYSQLESDN EKDSVSGIQV AAES

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.