Factsheet for Zm00001d041725_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16055	Sorghum	cytosol	95.92	96.91
Zm00001d035304_P001	Maize	mitochondrion	94.9	95.38
TraesCS5D01G115000.1	Wheat	cytosol	93.37	93.37
HORVU5Hr1G028180.1	Barley	cytosol	92.86	92.86
TraesCS5B01G107400.1	Wheat	cytosol	92.86	92.86
Os12t0510900-01	Rice	cytosol	46.94	91.09
GSMUA_Achr1P22510_001	Banana	cytosol	80.1	83.96
GSMUA_Achr2P06650_001	Banana	cytosol	80.61	81.03
GSMUA_Achr8P31070_001	Banana	cytosol	79.59	80.83
TraesCS5A01G103100.2	Wheat	cytosol	92.35	77.02
Solyc11g044740.1.1	Tomato	cytosol	73.98	75.13
KRH35659	Soybean	cytosol	68.37	74.44
PGSC0003DMT400059073	Potato	cytosol	72.96	74.09
VIT_03s0091g01010.t01	Wine grape	cytosol	72.45	73.2
Zm00001d028550_P001	Maize	extracellular, mitochondrion	50.51	50.0
Zm00001d002844_P003	Maize	cytosol	49.49	47.09
Zm00001d025926_P001	Maize	cytosol	47.96	45.85
Zm00001d051262_P001	Maize	cytosol	47.96	45.41
Zm00001d017382_P001	Maize	cytosol	47.45	37.65
Zm00001d037252_P002	Maize	cytosol	56.12	7.57

Protein Annotations

EntrezGene:100281636	MapMan:15.5.41	Gene3D:2.10.110.10	UniProt:B6SXB1	EMBL:EU957376	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	EMBL:KJ728259	ProteinID:ONM33567.1	PFAM:PF00412
ScanProsite:PS00478	PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF35	SMART:SM00132	SUPFAM:SSF57716
UniParc:UPI000182C40F	EnsemblPlantsGene:Zm00001d041725	EnsemblPlants:Zm00001d041725_P001	EnsemblPlants:Zm00001d041725_T001	InterPro:Znf_LIM	SEG:seg

Description

LIM-transcription factor 7Pollen-specific protein SF3

Coordinates

chr3:-:135291605..135293112

Molecular Weight (calculated)

22110.1 Da

IEP (calculated)

8.211

GRAVY (calculated)

-0.669

Length

196 amino acids

Sequence
(BLAST)

001: MATSFQGTTT KCTACDKTVY LVDKLTADNR VYHKACFRCH HCKGTLKLAN YNSFDGVLYC RPHFDQLFKR TGSLDKSFQG TPKVVKPERN VGNENATKVS
101: SAFAGTREKC VGCSKTVYPI ERVTVNNTMY HKCCFKCCHG GCTISPSNYI AHEGKLYCKH HHVQLIKEKG NFSQLENDHE KTSQAGSLED DEEEEY

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.