Factsheet for Zm00001d028550_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013571_P001
Zm00001d033419_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39900.1	Zm00001d013571_P001	AT4G19700.1	21798944
AT2G39900.1	Zm00001d033419_P001	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95125	Sorghum	cytosol	97.98	98.48
Os03t0266100-01	Rice	plasma membrane	89.39	90.31
TraesCS4B01G212600.1	Wheat	cytosol	87.88	85.29
TraesCS4D01G213600.1	Wheat	cytosol	87.37	84.8
GSMUA_Achr6P14980_001	Banana	cytosol	75.76	78.95
VIT_13s0019g03280.t01	Wine grape	cytosol	75.25	78.84
GSMUA_Achr10P...	Banana	cytosol	75.25	78.42
KRH15005	Soybean	cytosol	73.23	76.72
Bra005003.1-P	Field mustard	cytosol	75.76	75.38
KRG97787	Soybean	cytosol	75.25	75.25
Solyc05g052780.2.1	Tomato	cytosol	71.72	75.13
PGSC0003DMT400069763	Potato	cytosol	71.72	75.13
CDX74822	Canola	cytosol	75.76	75.0
CDY20498	Canola	cytosol	75.76	75.0
CDY60999	Canola	cytosol	75.25	74.5
KRH31081	Soybean	cytosol	74.75	74.0
CDY27267	Canola	cytosol	71.21	70.15
CDX72203	Canola	cytosol	71.21	70.15
AT2G39900.1	Thale cress	cytosol	70.71	70.0
Bra007189.1-P	Field mustard	cytosol	70.71	69.65
AT3G55770.7	Thale cress	cytosol	71.21	60.52
Zm00001d051262_P001	Maize	cytosol	60.1	57.49
Zm00001d002844_P003	Maize	cytosol	59.09	56.8
Zm00001d025926_P001	Maize	cytosol	58.59	56.59
CDY02959	Canola	mitochondrion	71.72	52.79
CDX76073	Canola	mitochondrion	71.72	52.59
Zm00001d041725_P001	Maize	cytosol	50.0	50.51
Zm00001d035304_P001	Maize	mitochondrion	49.49	50.26
Zm00001d017382_P001	Maize	cytosol	60.1	48.18
Bra014721.1-P	Field mustard	cytosol, mitochondrion	71.72	45.66
KRH73124	Soybean	cytosol	36.87	43.45
Zm00001d037252_P002	Maize	cytosol	48.99	6.68

Protein Annotations

EntrezGene:100281283	MapMan:15.5.41	Gene3D:2.10.110.10	UniProt:B6SU00	EMBL:BT068434	EMBL:EU956215
EMBL:EU972570	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	EMBL:KJ727646
ProteinID:ONL96355.1	PFAM:PF00412	ScanProsite:PS00478	PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF52
SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI000182BCA8	EnsemblPlantsGene:Zm00001d028550	EnsemblPlants:Zm00001d028550_P001	EnsemblPlants:Zm00001d028550_T001
InterPro:Znf_LIM	:	:	:	:	:

Description

LIM-transcription factor 1LIM domain-containing protein WLIM2b

Coordinates

chr1:+:38975759..38978074

Molecular Weight (calculated)

21965.0 Da

IEP (calculated)

8.814

GRAVY (calculated)

-0.569

Length

198 amino acids

Sequence
(BLAST)

001: MFSGTQQKCK VCTKTVYPMD QLSTDGVVFH RSCFKCQHCK STLSLSNYSS FEGVPYCKTH FEQLFKETGS YNKSFQSQSP AKITPEKLAP ELTRSPSKAA
101: RMFSGTQDKC ATCGKTAYPL EKVTVEEKSY HKSCFKCSHG GCAITPSNYA ALEGILYCKH HFSQLFKEKG SYNHLIKCAS VKRAAEAQPE QPASDSSS

Best Arabidopsis Sequence Match ( AT2G39900.1 )
(BLAST)

001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES

Arabidopsis Description

WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.