Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89500 | Sorghum | cytosol | 88.51 | 87.19 |
| GSMUA_Achr9P18250_001 | Banana | cytosol | 8.6 | 60.68 |
| GSMUA_Achr8P25860_001 | Banana | cytosol | 8.4 | 60.4 |
| Zm00001d035304_P001 | Maize | mitochondrion | 7.64 | 56.92 |
| Zm00001d041725_P001 | Maize | cytosol | 7.57 | 56.12 |
| TraesCS7A01G193500.2 | Wheat | cytosol | 46.04 | 52.76 |
| TraesCS7B01G098800.3 | Wheat | cytosol | 45.22 | 52.35 |
| TraesCS7D01G194800.1 | Wheat | cytosol | 45.42 | 51.6 |
| HORVU7Hr1G039480.4 | Barley | cytosol, endoplasmic reticulum | 43.84 | 49.49 |
| Zm00001d028550_P001 | Maize | extracellular, mitochondrion | 6.68 | 48.99 |
| Zm00001d025926_P001 | Maize | cytosol | 6.4 | 45.37 |
| Zm00001d002844_P003 | Maize | cytosol | 6.33 | 44.66 |
| Zm00001d051262_P001 | Maize | cytosol | 6.26 | 43.96 |
| Zm00001d017382_P001 | Maize | cytosol | 6.13 | 36.03 |
Protein Annotations
| EnsemblPlants:Zm00001d037252_P002 | EnsemblPlants:Zm00001d037252_T002 | EnsemblPlantsGene:Zm00001d037252 | EntrezGene:103629948 | Gene3D:2.10.110.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001781 | InterPro:Znf_LIM | ncoils:Coil | PFAM:PF00412 |
| PFscan:PS50023 | ProteinID:AQK83423.1 | ScanProsite:PS00478 | SEG:seg | SMART:SM00132 | SUPFAM:SSF57716 |
| UniParc:UPI000221A033 | UniProt:A0A1D6LVZ7 | MapMan:15.5.41 | : | : | : |
Description
LIM-transcription factor 12Putative LIM-type zinc finger domain family protein
Coordinates
chr6:-:118129959..118140120
Molecular Weight (calculated)
156634.0 Da
IEP (calculated)
4.316
GRAVY (calculated)
-0.970
Length
1453 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSGAWGGTTQ KCASCGRRVY PVEELAADGR VYHRPCFRCH HCKSTLQFSN YSSVEGVLYC KPHYDQILKS TGSLEKSFEG VARSAKSEKS NGHKGQQSSR
0101: FSNMFVGTQE KCVVCNKTVY PLEKVALNGN SYHKSCFRCT HGGCTLSPSN HITHEGKLYC KTHHSQLFMV KGNFSQFEDN SGNAKVTIEK LPETEEATKN
0201: PDQGDEATRK PVENEPTDEK TSKNNVAAEK QLQSGVDVTK PSESTTAENE RGTEGESKSN VVNKKPSESI VEKPLQNSVV DVKPSGNSAA MRKPWQRSMQ
0301: TDKPFLSSTS TVNPSSSSDT TEKLSSSNGV DMKQSESSTL VKTTCKQNSP TENPPQSVLP SDKPSATSVD DAKPSESSKV IKKPWQRNMA AEKQLQNSAP
0401: SQKSVATDKP SPTTGMKSLD NTTEVKSPWG RRMFNNKSLK RSVDTEKSSE TSVVDVRPGE TSTVAPVPQQ QTENVEKPSA TSADDAKSAD DTKSADDVKP
0501: SVASPDAKST DDVKSSENNA AVVRKPWQRN IGTGKQPLTT VVGPKTTETS GTVKRLWQRS AATASKSGTA VVTPLQSSVV VSKPFQSNVA VKKTWQRSVT
0601: PENQLESNMS SNKPLPSKVV VESLLQSNTV EKVFQSTVPT EEPQKGIMAT ENQSQTIKVT KKSNETSMEL SVTSETTKPP PLAATVLQSD VSTEQPSQTD
0701: MPTMAPSQIP EPTEKPSESD FNAEKLSESV VKAEKSSTTD TAAEKPLPSM ITEKVESVAG TLKPSQSDTA LQEILERNMA TEEILQTAMA VEDAPPTNLI
0801: TEKSLMKDAS EEPVQTNEPS EQPLKTEEIE KPQQSEKIAT DTRGSEVSTE EMLELESNAT KLNKDQSELE GLSSGRNPPN FQSNPNAGQR SESKGIVAEK
0901: AADHIMEAED DVDAEHSSES QSVAPAEVRK EQPSEHQKDV DMEQLLEPQN QDHPWNPLDP VSDTAAKDSS EPKSDIATEK PAESQNNAEQ SVEQQSEPQS
1001: DKSTERPEVH QSNTSNDELS RLQNDAGTDK LSVQSSDPES NASVSKPSES QTDVATMEAL EPQIDAPPDK ATDQPVKPQD DASAKNPMGT ESDAVCDKPS
1101: ESSSDTETLL VCHQNSSITT DEPVQGGISY DTPHQRSAPI ETTPGSETVV DDCIHHEDTS SKPSEENKAI EEPEEVSAKL PDDHVTSEKS SEEDKENAEA
1201: SVDSAPLGNP LEVNEESSNP SGDTVTPEKP LEEDKTSAEP SESDASFGKI LEADEVSANP SEDIATPEKP LEEGVGSVEP SEDNSVLDKP LEEEEVDAKP
1301: VKDVVTPEKP LEEGSTTAEP LEDNAAHEEA KEEDEVIAKP LSSVALEKSL EGSEASVEPS EDNAALEKPS EDDEANAKSS EDSVYVEKPQ QEEDDNGVKA
1401: LEEGVSPEKS AAGKPLEEDP VHEKPADAVA EPSSQDDTAT EKPSATTDTA ETA
0101: FSNMFVGTQE KCVVCNKTVY PLEKVALNGN SYHKSCFRCT HGGCTLSPSN HITHEGKLYC KTHHSQLFMV KGNFSQFEDN SGNAKVTIEK LPETEEATKN
0201: PDQGDEATRK PVENEPTDEK TSKNNVAAEK QLQSGVDVTK PSESTTAENE RGTEGESKSN VVNKKPSESI VEKPLQNSVV DVKPSGNSAA MRKPWQRSMQ
0301: TDKPFLSSTS TVNPSSSSDT TEKLSSSNGV DMKQSESSTL VKTTCKQNSP TENPPQSVLP SDKPSATSVD DAKPSESSKV IKKPWQRNMA AEKQLQNSAP
0401: SQKSVATDKP SPTTGMKSLD NTTEVKSPWG RRMFNNKSLK RSVDTEKSSE TSVVDVRPGE TSTVAPVPQQ QTENVEKPSA TSADDAKSAD DTKSADDVKP
0501: SVASPDAKST DDVKSSENNA AVVRKPWQRN IGTGKQPLTT VVGPKTTETS GTVKRLWQRS AATASKSGTA VVTPLQSSVV VSKPFQSNVA VKKTWQRSVT
0601: PENQLESNMS SNKPLPSKVV VESLLQSNTV EKVFQSTVPT EEPQKGIMAT ENQSQTIKVT KKSNETSMEL SVTSETTKPP PLAATVLQSD VSTEQPSQTD
0701: MPTMAPSQIP EPTEKPSESD FNAEKLSESV VKAEKSSTTD TAAEKPLPSM ITEKVESVAG TLKPSQSDTA LQEILERNMA TEEILQTAMA VEDAPPTNLI
0801: TEKSLMKDAS EEPVQTNEPS EQPLKTEEIE KPQQSEKIAT DTRGSEVSTE EMLELESNAT KLNKDQSELE GLSSGRNPPN FQSNPNAGQR SESKGIVAEK
0901: AADHIMEAED DVDAEHSSES QSVAPAEVRK EQPSEHQKDV DMEQLLEPQN QDHPWNPLDP VSDTAAKDSS EPKSDIATEK PAESQNNAEQ SVEQQSEPQS
1001: DKSTERPEVH QSNTSNDELS RLQNDAGTDK LSVQSSDPES NASVSKPSES QTDVATMEAL EPQIDAPPDK ATDQPVKPQD DASAKNPMGT ESDAVCDKPS
1101: ESSSDTETLL VCHQNSSITT DEPVQGGISY DTPHQRSAPI ETTPGSETVV DDCIHHEDTS SKPSEENKAI EEPEEVSAKL PDDHVTSEKS SEEDKENAEA
1201: SVDSAPLGNP LEVNEESSNP SGDTVTPEKP LEEDKTSAEP SESDASFGKI LEADEVSANP SEDIATPEKP LEEGVGSVEP SEDNSVLDKP LEEEEVDAKP
1301: VKDVVTPEKP LEEGSTTAEP LEDNAAHEEA KEEDEVIAKP LSSVALEKSL EGSEASVEPS EDNAALEKPS EDDEANAKSS EDSVYVEKPQ QEEDDNGVKA
1401: LEEGVSPEKS AAGKPLEEDP VHEKPADAVA EPSSQDDTAT EKPSATTDTA ETA
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.