Factsheet for Zm00001d017382_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05836	Sorghum	cytosol	76.52	94.5
Zm00001d051262_P001	Maize	cytosol	76.92	91.79
TraesCS6B01G265100.1	Wheat	cytosol	69.23	82.61
TraesCS6A01G236600.1	Wheat	cytosol	69.64	81.13
TraesCS6D01G219200.1	Wheat	cytosol	69.64	80.75
Zm00001d002844_P003	Maize	cytosol	63.97	76.7
Zm00001d025926_P001	Maize	cytosol	62.35	75.12
GSMUA_Achr1P03020_001	Banana	cytosol	53.04	73.6
GSMUA_Achr4P29420_001	Banana	cytosol	57.49	70.65
GSMUA_Achr11P...	Banana	cytosol	55.87	69.0
GSMUA_Achr5P20680_001	Banana	cytosol	55.87	68.66
GSMUA_Achr2P18580_001	Banana	cytosol	51.42	68.28
GSMUA_Achr2P11440_001	Banana	cytosol	54.66	67.5
Os02t0641000-00	Rice	mitochondrion	38.06	61.04
Zm00001d028550_P001	Maize	extracellular, mitochondrion	48.18	60.1
VIT_02s0025g03980.t01	Wine grape	cytosol	51.42	59.07
PGSC0003DMT400014797	Potato	cytosol	39.68	58.33
Solyc08g007940.2.1	Tomato	cytosol	47.37	56.8
Solyc08g080740.2.1	Tomato	cytosol	44.53	56.7
KRH59846	Soybean	cytosol	50.61	55.8
KRH41147	Soybean	cytosol	49.8	53.95
HORVU6Hr1G060580.5	Barley	plastid	40.89	49.03
Zm00001d041725_P001	Maize	cytosol	37.65	47.45
Zm00001d035304_P001	Maize	mitochondrion	37.25	47.18
PGSC0003DMT400007915	Potato	cytosol	40.08	44.39
Zm00001d037252_P002	Maize	cytosol	36.03	6.13

Protein Annotations

EnsemblPlants:Zm00001d017382_P001	EnsemblPlants:Zm00001d017382_T001	EnsemblPlantsGene:Zm00001d017382	EntrezGene:100502420	Gene3D:2.10.110.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22
PFAM:PF00412	PFscan:PS50023	ProteinID:AQK73043.1	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI000842C432	UniProt:A0A1D6HEG9	MapMan:15.5.41	:	:

Description

LIM-transcription factor 9LIM domain-containing protein PLIM2b

Coordinates

chr5:-:193930984..193932787

Molecular Weight (calculated)

26772.9 Da

IEP (calculated)

8.425

GRAVY (calculated)

-0.291

Length

247 amino acids

Sequence
(BLAST)

001: MSFTGTQDKC KACDKTVHII DLLTADGVSY HKTCFKCSHC KGVLSISSYS SMDGVLYCKT HFEQLFKETG TFSKNFQGGA SSNKNDQVRF LKSSTQIWLK
101: CSISSKTLLA MPSSVIADYL RTMPICKSLQ AKAPSKLSSA FSGTQDKCAA CQKTVYPLEK MTLEGESYHK SCFKCSHGGC ILTTSSYAAL NGVLYCKIHF
201: SQLFKEKGSY NHLIETAQTK KNEAAEAGPE PPADAGAAEP EAPAQSA

Best Arabidopsis Sequence Match ( AT2G45800.1 )
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCTHC KGTLVISNYS SMDGVLYCKP HFEQLFKESG NYSKNFQAGK TEKPNDHLTR TPSKLSSFFS
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES

Arabidopsis Description

PLIM2ALIM domain-containing protein PLIM2a [Source:UniProtKB/Swiss-Prot;Acc:O80839]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.