Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0641000-00 | Rice | mitochondrion | 47.09 | 62.99 |
| EES05836 | Sorghum | cytosol | 49.51 | 51.0 |
| TraesCS6B01G265100.1 | Wheat | cytosol | 50.97 | 50.72 |
| Zm00001d051262_P001 | Maize | cytosol | 50.49 | 50.24 |
| TraesCS6D01G219200.1 | Wheat | cytosol | 50.49 | 48.83 |
| TraesCS6A01G236600.1 | Wheat | cytosol | 50.0 | 48.58 |
| HORVU5Hr1G031550.3 | Barley | cytosol | 21.84 | 45.45 |
| GSMUA_Achr1P03020_001 | Banana | cytosol | 38.35 | 44.38 |
| PGSC0003DMT400014797 | Potato | cytosol | 35.92 | 44.05 |
| GSMUA_Achr2P18580_001 | Banana | cytosol | 38.84 | 43.01 |
| GSMUA_Achr11P... | Banana | cytosol | 40.78 | 42.0 |
| GSMUA_Achr4P29420_001 | Banana | cytosol | 40.78 | 41.79 |
| GSMUA_Achr2P11440_001 | Banana | cytosol | 40.29 | 41.5 |
| Zm00001d017382_P001 | Maize | cytosol | 49.03 | 40.89 |
| GSMUA_Achr5P20680_001 | Banana | cytosol | 39.32 | 40.3 |
| Solyc08g080740.2.1 | Tomato | cytosol | 37.38 | 39.69 |
| Solyc08g007940.2.1 | Tomato | cytosol | 38.84 | 38.84 |
| VIT_02s0025g03980.t01 | Wine grape | cytosol | 39.81 | 38.14 |
| KRH59846 | Soybean | cytosol | 40.78 | 37.5 |
| KRH41147 | Soybean | cytosol | 40.78 | 36.84 |
| PGSC0003DMT400007915 | Potato | cytosol | 36.41 | 33.63 |
| HORVU5Hr1G028180.1 | Barley | cytosol | 28.64 | 30.1 |
| HORVU7Hr1G039480.4 | Barley | cytosol, endoplasmic reticulum | 28.16 | 4.51 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G060580.5 | EnsemblPlantsGene:HORVU6Hr1G060580 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF22 | PFAM:PF00412 | PFscan:PS50023 |
| SEG:seg | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI000B47D07C | UniProt:A0A287UCS7 | MapMan:15.5.41 |
Description
No Description!
Coordinates
chrchr6H:-:402931460..402932546
Molecular Weight (calculated)
22004.9 Da
IEP (calculated)
10.396
GRAVY (calculated)
-0.643
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: CLSPARRTSA RRATRPSTSS TSSPPTASPT TRHASSAATA RGPSRCATTL PWMVSSTARP ISNNSSRRRG ASQRNLRQVA NPRRRNLLQA KAPSKMSSAF
101: SGTQDKCAAC QKTVYPLEKL SLEGECYHKG CFKCSHGGCI LTTSSYAALN GILYCKIHFS QLFKEKGSYN HLIKTAQTKK ENEEAAAAAE AGAEPAAAAE
201: PPQDEA
101: SGTQDKCAAC QKTVYPLEKL SLEGECYHKG CFKCSHGGCI LTTSSYAALN GILYCKIHFS QLFKEKGSYN HLIKTAQTKK ENEEAAAAAE AGAEPAAAAE
201: PPQDEA
001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES
Arabidopsis Description
PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.