Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P03020_001 | Banana | cytosol | 77.0 | 86.52 |
| GSMUA_Achr4P29420_001 | Banana | cytosol | 85.5 | 85.07 |
| GSMUA_Achr2P18580_001 | Banana | cytosol | 70.0 | 75.27 |
| GSMUA_Achr11P... | Banana | cytosol | 75.0 | 75.0 |
| GSMUA_Achr5P20680_001 | Banana | cytosol | 75.0 | 74.63 |
| TraesCS6B01G265100.1 | Wheat | cytosol | 71.5 | 69.08 |
| EES05836 | Sorghum | cytosol | 68.5 | 68.5 |
| Os04t0532500-01 | Rice | plasma membrane | 68.5 | 68.16 |
| EES12556 | Sorghum | cytosol | 69.0 | 67.98 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 64.5 | 67.89 |
| TraesCS6A01G236600.1 | Wheat | cytosol | 71.5 | 67.45 |
| GSMUA_Achr10P... | Banana | cytosol | 64.0 | 67.37 |
| TraesCS6D01G219200.1 | Wheat | cytosol | 71.5 | 67.14 |
| Zm00001d051262_P001 | Maize | cytosol | 68.5 | 66.18 |
| Zm00001d002844_P003 | Maize | cytosol | 68.0 | 66.02 |
| TraesCS2A01G370800.1 | Wheat | cytosol | 67.0 | 66.01 |
| TraesCS2D01G367100.1 | Wheat | cytosol | 67.0 | 65.37 |
| Zm00001d025926_P001 | Maize | cytosol | 66.5 | 64.88 |
| TraesCS2B01G388000.1 | Wheat | cytosol | 66.5 | 64.56 |
| TraesCS1A01G173600.1 | Wheat | cytosol | 62.5 | 62.5 |
| TraesCS1D01G165200.1 | Wheat | cytosol | 63.0 | 60.87 |
| TraesCS1B01G190800.1 | Wheat | cytosol | 62.5 | 60.1 |
| VIT_02s0025g03980.t01 | Wine grape | cytosol | 62.0 | 57.67 |
| Solyc08g007940.2.1 | Tomato | cytosol | 58.0 | 56.31 |
| Solyc08g080740.2.1 | Tomato | cytosol | 53.5 | 55.15 |
| PGSC0003DMT400014797 | Potato | cytosol | 46.0 | 54.76 |
| Zm00001d017382_P001 | Maize | cytosol | 67.5 | 54.66 |
| GSMUA_Achr1P22510_001 | Banana | cytosol | 50.0 | 53.48 |
| KRH59846 | Soybean | cytosol | 59.0 | 52.68 |
| GSMUA_Achr8P31070_001 | Banana | cytosol | 49.5 | 51.3 |
| Os02t0641000-00 | Rice | mitochondrion | 38.5 | 50.0 |
| KRH41147 | Soybean | cytosol | 57.0 | 50.0 |
| GSMUA_Achr2P06650_001 | Banana | cytosol | 46.0 | 47.18 |
| GSMUA_Achr8P25860_001 | Banana | cytosol | 46.0 | 45.54 |
| GSMUA_Achr9P18250_001 | Banana | cytosol | 45.5 | 44.17 |
| PGSC0003DMT400007915 | Potato | cytosol | 48.5 | 43.5 |
| HORVU6Hr1G060580.5 | Barley | plastid | 41.5 | 40.29 |
| HORVU5Hr1G031550.3 | Barley | cytosol | 16.0 | 32.32 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P11440_001 | EnsemblPlants:GSMUA_Achr2T11440_001 | EnsemblPlantsGene:GSMUA_Achr2G11440_001 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF22 | PFAM:PF00412 |
| PFscan:PS50023 | ScanProsite:PS00478 | SEG:seg | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI000296EDA7 |
| UniProt:M0S735 | MapMan:15.5.41 | : | : | : | : |
Description
Putative Pollen-specific protein SF3 [Source:GMGC_GENE;Acc:GSMUA_Achr2G11440_001]
Coordinates
chr2:-:14315595..14317245
Molecular Weight (calculated)
22199.5 Da
IEP (calculated)
8.709
GRAVY (calculated)
-0.527
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSGTQDKC KACDKTVHFI DLLTADGVPF HKTCFKCSRC KGTLSMCNYS SLDGILYCKP HFEQLFKETG SFTKKFPIGA KSGERNELAR PASRVSSMFS
101: GTQDKCATCH KTAYPLEKLT VEGESYHKTC FKCSHGGCKL TPSSYAALEG IIYCKHHFAQ LFKEKGSYNH LLKVAAMKQS SGSEEAAEPK QEQAQSQMNR
101: GTQDKCATCH KTAYPLEKLT VEGESYHKTC FKCSHGGCKL TPSSYAALEG IIYCKHHFAQ LFKEKGSYNH LLKVAAMKQS SGSEEAAEPK QEQAQSQMNR
001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES
Arabidopsis Description
PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.