CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002844_P003	Maize	cytosol	92.61	91.26
Os04t0532500-01	Rice	plasma membrane	90.15	91.04
Zm00001d025926_P001	Maize	cytosol	89.66	88.78
TraesCS2A01G370800.1	Wheat	cytosol	88.67	88.67
TraesCS2D01G367100.1	Wheat	cytosol	89.16	88.29
TraesCS2B01G388000.1	Wheat	cytosol	88.67	87.38
EES05836	Sorghum	cytosol	75.37	76.5
GSMUA_Achr1P03020_001	Banana	cytosol	65.52	74.72
GSMUA_Achr4P29420_001	Banana	cytosol	72.41	73.13
GSMUA_Achr11P...	Banana	cytosol	68.47	69.5
GSMUA_Achr2P11440_001	Banana	cytosol	67.98	69.0
GSMUA_Achr2P18580_001	Banana	cytosol	63.05	68.82
GSMUA_Achr5P20680_001	Banana	cytosol	66.5	67.16
EER95125	Sorghum	cytosol	57.64	59.39
VIT_02s0025g03980.t01	Wine grape	cytosol	61.58	58.14
PGSC0003DMT400014797	Potato	cytosol	47.29	57.14
Solyc08g007940.2.1	Tomato	cytosol	56.16	55.34
KRH59846	Soybean	cytosol	58.62	53.12
Solyc08g080740.2.1	Tomato	cytosol	50.74	53.09
KRH41147	Soybean	cytosol	57.64	51.32
EES16055	Sorghum	cytosol	47.78	50.0
HORVU5Hr1G031550.3	Barley	cytosol	22.66	46.46
PGSC0003DMT400007915	Potato	cytosol	46.8	42.6
EER89500	Sorghum	cytosol	43.84	6.03

Protein Annotations

EnsemblPlants:EES12556	EnsemblPlantsGene:SORBI_3006G159000	EntrezGene:8083314	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF30	PFAM:PF00412
PFscan:PS50023	ProteinID:EES12556	ProteinID:EES12556.1	RefSeq:XP_002448228.1	ScanProsite:PS00478	SEG:seg
SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0001A87445	UniProt:C5YCW9	MapMan:15.5.41	:

Description

hypothetical protein

Coordinates

chr6:-:51718519..51720006

Molecular Weight (calculated)

22298.5 Da

IEP (calculated)

7.579

GRAVY (calculated)

-0.421

Length

203 amino acids

Sequence
(BLAST)

001: MSFTGTQDKC TACDKTVHFI DLLTADGVIY HKTCFKCSHC KGILSMCSYS SMDGVLYCKT HFEQLFKETG SFSKKFTPGC KSDKGELARA PSKLSSAFSG
101: TQDKCAACQK TVYPLEKLTL EGEAYHKSCF KCSHGGCILT TSSYAALNGV LYCKIHFGQL FMEKGSYNHM KKKSTSQEVL PDLAAEEQPP QPAAPEDEKG
201: EDN

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.