CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91098

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39900.1	EER91098	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028550_P001	Maize	extracellular, mitochondrion	98.48	97.98
Os03t0266100-01	Rice	plasma membrane	89.85	90.31
TraesCS4B01G212600.1	Wheat	cytosol	87.31	84.31
TraesCS4D01G213600.1	Wheat	cytosol	86.8	83.82
GSMUA_Achr6P14980_001	Banana	cytosol	76.14	78.95
VIT_13s0019g03280.t01	Wine grape	cytosol	75.63	78.84
GSMUA_Achr10P...	Banana	cytosol	75.63	78.42
KRH15005	Soybean	cytosol	74.62	77.78
KRG97787	Soybean	cytosol	76.65	76.26
Bra005003.1-P	Field mustard	cytosol	76.14	75.38
CDX74822	Canola	cytosol	76.14	75.0
CDY20498	Canola	cytosol	76.14	75.0
KRH31081	Soybean	cytosol	76.14	75.0
Solyc05g052780.2.1	Tomato	cytosol	71.57	74.6
PGSC0003DMT400069763	Potato	cytosol	71.57	74.6
CDY60999	Canola	cytosol	75.63	74.5
CDY27267	Canola	cytosol	71.57	70.15
CDX72203	Canola	cytosol	71.57	70.15
AT2G39900.1	Thale cress	cytosol	71.07	70.0
Bra007189.1-P	Field mustard	cytosol	71.07	69.65
AT3G55770.7	Thale cress	cytosol	71.57	60.52
EES05836	Sorghum	cytosol	60.41	59.5
EES12556	Sorghum	cytosol	59.39	57.64
CDY02959	Canola	mitochondrion	72.08	52.79
CDX76073	Canola	mitochondrion	72.08	52.59
EES16055	Sorghum	cytosol	50.25	51.03
Bra014721.1-P	Field mustard	cytosol, mitochondrion	72.08	45.66
KRH73124	Soybean	cytosol	37.06	43.45
EER89500	Sorghum	cytosol	48.22	6.44

Protein Annotations

EnsemblPlants:EER95125	EnsemblPlantsGene:SORBI_3001G426200	EntrezGene:8054287	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF52	PFAM:PF00412
PFscan:PS50023	ProteinID:EER95125	ProteinID:EER95125.1	RefSeq:XP_002468127.1	ScanProsite:PS00478	SMART:SM00132
SUPFAM:SSF57716	unigene:Sbi.4839	UniParc:UPI0001A831A8	UniProt:C5WQ45	MapMan:15.5.41	:

Description

hypothetical protein

Coordinates

chr1:-:70577410..70579551

Molecular Weight (calculated)

21803.8 Da

IEP (calculated)

8.814

GRAVY (calculated)

-0.554

Length

197 amino acids

Sequence
(BLAST)

001: MFSGTQQKCK VCTKTVYPMD QLSTDGVAFH RSCFKCQHCK STLSLSNYSS FEGVPYCKAH FEQLFKETGS YNKSFQSQSP AKITPEKLAP ELTRSPSKAA
101: RMFSGTQDKC ATCGKTAYPL EKVTVEEKAY HKSCFKCSHG GCAITPSNYA ALEGILYCKH HFSQLFKEKG SYNHLIKCAS VKRAAEAQPE QPASDSS

Best Arabidopsis Sequence Match ( AT2G39900.1 )
(BLAST)

001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES

Arabidopsis Description

WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.