CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX94520
CDY01615
CDY07541
CDY09318
CDY21311
CDY51918
CDY71607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39900.1	CDX94520	AT4G19700.1	21798944
AT2G39900.1	CDY01615	AT4G19700.1	21798944
AT2G39900.1	CDY07541	AT4G19700.1	21798944
AT2G39900.1	CDY09318	AT4G19700.1	21798944
AT2G39900.1	CDY21311	AT4G19700.1	21798944
AT2G39900.1	CDY51918	AT4G19700.1	21798944
AT2G39900.1	CDY71607	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005003.1-P	Field mustard	cytosol	99.5	100.0
CDY20498	Canola	cytosol	100.0	100.0
CDY60999	Canola	cytosol	97.5	97.5
AT2G39900.1	Thale cress	cytosol	92.0	92.0
CDY27267	Canola	cytosol	88.5	88.06
CDX72203	Canola	cytosol	88.0	87.56
VIT_13s0019g03280.t01	Wine grape	cytosol	79.5	84.13
KRG97787	Soybean	cytosol	80.5	81.31
KRH15005	Soybean	cytosol	76.0	80.42
KRH31081	Soybean	cytosol	80.0	80.0
Solyc05g052780.2.1	Tomato	cytosol	75.5	79.89
PGSC0003DMT400069763	Potato	cytosol	75.5	79.89
GSMUA_Achr6P14980_001	Banana	cytosol	75.5	79.47
GSMUA_Achr10P...	Banana	cytosol	75.5	79.47
Os03t0266100-01	Rice	plasma membrane	75.0	76.53
EER95125	Sorghum	cytosol	75.0	76.14
Zm00001d028550_P001	Maize	extracellular, mitochondrion	75.0	75.76
TraesCS4B01G212600.1	Wheat	cytosol	74.5	73.04
TraesCS4D01G213600.1	Wheat	cytosol	74.0	72.55
CDY02959	Canola	mitochondrion	88.5	65.8
CDX76073	Canola	mitochondrion	88.0	65.19
CDX86962	Canola	cytosol	41.5	60.58
CDY38028	Canola	cytosol	58.5	57.07
CDY45697	Canola	cytosol	51.5	56.91
CDY20647	Canola	cytosol	53.5	56.61
CDY01571	Canola	cytosol	58.0	56.59
CDX89105	Canola	cytosol	59.5	56.4
CDY15152	Canola	cytosol	57.5	56.1
CDX90059	Canola	cytosol	57.5	56.1
CDY31040	Canola	cytosol	53.0	56.08
CDX71757	Canola	cytosol	60.5	56.02
CDY56926	Canola	cytosol	59.0	55.66
CDX94916	Canola	cytosol	52.5	55.56
CDX93448	Canola	cytosol	52.5	55.26
CDY48936	Canola	cytosol	59.5	54.59
CDY27358	Canola	cytosol	60.5	52.61
CDY37066	Canola	cytosol	60.0	52.4
CDY18899	Canola	cytosol	58.5	51.54
CDX74767	Canola	cytosol	59.0	51.53
CDX95666	Canola	cytosol	56.5	49.56
CDY68273	Canola	cytosol	56.0	49.56
CDX83389	Canola	cytosol	56.0	49.56
KRH73124	Soybean	cytosol	39.5	47.02

Protein Annotations

EnsemblPlants:CDX74822	EnsemblPlantsGene:GSBRNA2T00116797001	Gene3D:2.10.110.10	GO:A0A078CD86	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF28	PFAM:PF00412
PFscan:PS50023	ProteinID:CDX74822	ProteinID:CDX74822.1	ProteinID:CDY20498.1	ScanProsite:PS00478	SEG:seg
SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0004EE6300	UniProt:A0A078CD86	MapMan:15.5.41	:

Description

BnaA05g05680DBnaA05g05680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CD86]

Coordinates

chrLK031802:-:816923..818456

Molecular Weight (calculated)

21905.2 Da

IEP (calculated)

8.707

GRAVY (calculated)

-0.352

Length

200 amino acids

Sequence
(BLAST)

001: MSFTGTQQKC RACEKTVYPM ELLSADGVPF HKSCFKCSHC KSTLQLSNYS SMEGVLYCKP HFEQLFKETG SFNKNFQSPA KPLTDKPTPE LTRTPSRVAG
101: MFSGTQDKCA TCSKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRSAAAATAA AAAVEAVPES

Best Arabidopsis Sequence Match ( AT2G39900.1 )
(BLAST)

001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES

Arabidopsis Description

WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.