Factsheet for Bra005003.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012532.1-P
Bra013423.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39900.1	Bra012532.1-P	AT4G19700.1	21798944
AT2G39900.1	Bra013423.1-P	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74822	Canola	cytosol	100.0	99.5
CDY20498	Canola	cytosol	100.0	99.5
AT2G39900.1	Thale cress	cytosol	91.96	91.5
Bra007189.1-P	Field mustard	cytosol	87.94	87.06
VIT_13s0019g03280.t01	Wine grape	cytosol	79.9	84.13
Bra026940.1-P	Field mustard	cytosol	37.69	81.52
KRG97787	Soybean	cytosol	80.4	80.81
KRH15005	Soybean	cytosol	76.38	80.42
Solyc05g052780.2.1	Tomato	cytosol	75.88	79.89
PGSC0003DMT400069763	Potato	cytosol	75.88	79.89
KRH31081	Soybean	cytosol	79.9	79.5
GSMUA_Achr6P14980_001	Banana	cytosol	75.88	79.47
GSMUA_Achr10P...	Banana	cytosol	75.88	79.47
Os03t0266100-01	Rice	plasma membrane	75.38	76.53
EER95125	Sorghum	cytosol	75.38	76.14
Zm00001d028550_P001	Maize	extracellular, mitochondrion	75.38	75.76
TraesCS4B01G212600.1	Wheat	cytosol	74.37	72.55
TraesCS4D01G213600.1	Wheat	cytosol	73.87	72.06
Bra032650.1-P	Field mustard	cytosol	58.79	57.07
Bra014447.1-P	Field mustard	cytosol	59.8	56.4
Bra014721.1-P	Field mustard	cytosol, mitochondrion	87.94	56.27
Bra033233.1-P	Field mustard	cytosol	57.79	56.1
Bra018454.1-P	Field mustard	cytosol	53.27	56.08
Bra019956.1-P	Field mustard	cytosol	52.76	55.26
Bra007586.1-P	Field mustard	cytosol	59.3	54.38
Bra039313.1-P	Field mustard	cytosol	60.3	52.4
Bra004939.1-P	Field mustard	cytosol	59.3	51.53
Bra000404.1-P	Field mustard	cytosol	55.78	49.12
KRH73124	Soybean	cytosol	39.7	47.02

Protein Annotations

MapMan:15.5.41	Gene3D:2.10.110.10	EnsemblPlantsGene:Bra005003	EnsemblPlants:Bra005003.1	EnsemblPlants:Bra005003.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0046872
GO:GO:0051015	GO:GO:0051017	InterPro:IPR001781	UniProt:M4CLB6	PFAM:PF00412	ScanProsite:PS00478
PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF28	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI00025473D4
InterPro:Znf_LIM	SEG:seg	:	:	:	:

Description

AT2G39900 (E=2e-103) | LIM domain-containing protein

Coordinates

chrA05:-:2915208..2916102

Molecular Weight (calculated)

21834.1 Da

IEP (calculated)

8.707

GRAVY (calculated)

-0.363

Length

199 amino acids

Sequence
(BLAST)

001: MSFTGTQQKC RACEKTVYPM ELLSADGVPF HKSCFKCSHC KSTLQLSNYS SMEGVLYCKP HFEQLFKETG SFNKNFQSPA KPLTDKPTPE LTRTPSRVAG
101: MFSGTQDKCA TCSKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRSAAAATAA AAVEAVPES

Best Arabidopsis Sequence Match ( AT2G39900.1 )
(BLAST)

001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES

Arabidopsis Description

WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.