Factsheet for Bra026940.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007189.1-P	Field mustard	cytosol	96.74	44.28
Bra005003.1-P	Field mustard	cytosol	81.52	37.69
KRG93772	Soybean	cytosol	25.0	31.51
Bra014721.1-P	Field mustard	cytosol, mitochondrion	98.91	29.26
Bra032650.1-P	Field mustard	cytosol	60.87	27.32
Bra033233.1-P	Field mustard	cytosol	59.78	26.83
Bra014447.1-P	Field mustard	cytosol	60.87	26.54
Bra018454.1-P	Field mustard	cytosol	52.17	25.4
Bra019956.1-P	Field mustard	cytosol	52.17	25.26
Bra039313.1-P	Field mustard	cytosol	60.87	24.45
Bra007586.1-P	Field mustard	cytosol	57.61	24.42
Bra004939.1-P	Field mustard	cytosol	59.78	24.02
Bra000404.1-P	Field mustard	cytosol	51.09	20.8

Protein Annotations

EnsemblPlants:Bra026940.1	EnsemblPlants:Bra026940.1-P	EnsemblPlantsGene:Bra026940	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF28	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002542F7B	UniProt:M4EDT0
MapMan:15.5.41	:	:	:	:	:

Description

AT3G55770 (E=1e-044) | LIM domain-containing protein

Coordinates

chrA09:+:34413038..34413494

Molecular Weight (calculated)

10369.4 Da

IEP (calculated)

8.813

GRAVY (calculated)

-0.584

Length

92 amino acids

Sequence
(BLAST)

1: MSSFTGTQQK CKACEKTVYP VELLSADGVS YHKSCFKCTH CKSRLQLSRY SSMEGVLYCK PHYEQLFKES GSFTKNFQSP AKPAEKSSPE LV

Best Arabidopsis Sequence Match ( AT3G55770.6 )
(BLAST)

001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYIIPS VTENLQGNQM FCTDA

Arabidopsis Description

GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.