Factsheet for Bra014721.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026940.1-P	Field mustard	cytosol	29.26	98.91
Bra007189.1-P	Field mustard	cytosol	62.7	97.01
Bra005003.1-P	Field mustard	cytosol	56.27	87.94
VIT_13s0019g03280.t01	Wine grape	cytosol	51.13	84.13
Solyc05g052780.2.1	Tomato	cytosol	49.84	82.01
PGSC0003DMT400069763	Potato	cytosol	49.84	82.01
KRG97787	Soybean	cytosol	51.77	81.31
KRH15005	Soybean	cytosol	48.55	79.89
AT3G55770.7	Thale cress	cytosol	59.81	79.83
GSMUA_Achr6P14980_001	Banana	cytosol	48.55	79.47
GSMUA_Achr10P...	Banana	cytosol	48.55	79.47
CDX76073	Canola	mitochondrion	68.81	79.26
KRH31081	Soybean	cytosol	50.8	79.0
Os03t0266100-01	Rice	plasma membrane	46.3	73.47
EER95125	Sorghum	cytosol	45.66	72.08
Zm00001d028550_P001	Maize	extracellular, mitochondrion	45.66	71.72
TraesCS4B01G212600.1	Wheat	cytosol	45.66	69.61
TraesCS4D01G213600.1	Wheat	cytosol	45.34	69.12
Bra032650.1-P	Field mustard	cytosol	35.69	54.15
Bra014447.1-P	Field mustard	cytosol	36.66	54.03
Bra018454.1-P	Field mustard	cytosol	32.8	53.97
Bra033233.1-P	Field mustard	cytosol	35.05	53.17
Bra019956.1-P	Field mustard	cytosol	32.48	53.16
Bra007586.1-P	Field mustard	cytosol	36.33	52.07
Bra039313.1-P	Field mustard	cytosol	37.3	50.66
Bra004939.1-P	Field mustard	cytosol	36.66	49.78
KRH73124	Soybean	cytosol	25.4	47.02
Bra000404.1-P	Field mustard	cytosol	33.76	46.46

Protein Annotations

MapMan:15.5.41	MapMan:17.1.2.1.36	Gene3D:2.10.110.10	Gene3D:2.40.10.190	EnsemblPlantsGene:Bra014721	EnsemblPlants:Bra014721.1
EnsemblPlants:Bra014721.1-P	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001781
InterPro:IPR038661	InterPro:L35A_sf	UniProt:M4DE02	HAMAP:MF_00573	PFAM:PD012670	PFAM:PF00412
PFAM:PF01247	ScanProsite:PS00478	ScanProsite:PS01105	PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF28
InterPro:Ribosomal_L35A	InterPro:Ribosomal_L35Ae_CS	SMART:SM00132	SUPFAM:SSF50447	SUPFAM:SSF57716	InterPro:Transl_B-barrel_sf
UniParc:UPI000254494F	InterPro:Znf_LIM	SEG:seg	:	:	:

Description

AT3G55770 (E=6e-101) | LIM domain-containing protein

Coordinates

chrA04:-:2502568..2506014

Molecular Weight (calculated)

34584.5 Da

IEP (calculated)

10.262

GRAVY (calculated)

-0.650

Length

311 amino acids

Sequence
(BLAST)

001: MKGRQGERVR LYVRGTVLGY KRSKSNQYPN TSLIQIEGVN TTEEVTWYKG KRMAYIYKAK TKKNGSHYRC IWGKVARPHG NSGVVRAKFT SNLPPKSMEK
101: KGQRQKGVEG RMSSFTGTQQ KCKACEKTVY PVELLSADGV SYHKSCFKCT HCKSRLQLSR YSSMEGVLYC KPHYEQLFKE SGSFTKNFQS PAKPAEKSSP
201: ELTRTPSRVA GMFSGTQEKC ATCSKTVYPI EKVTVESQTY HKSCFKCSHG GCPISPSNYA ALEGILYCKH HFAQLFKEKG SYNHLIKSAS IKRSAAAAVA
301: AGTPATAVPE S

Best Arabidopsis Sequence Match ( AT3G55770.3 )
(BLAST)

001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES

Arabidopsis Description

GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.