Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- golgi 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012779.1-P | |
| Bra033495.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10200.1 | Bra012779.1-P | AT4G15560.1 | 24104567 |
| AT1G10200.1 | Bra033495.1-P | AT4G15560.1 | 24104567 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31040 | Canola | cytosol | 100.0 | 100.0 |
| AT1G10200.1 | Thale cress | cytosol | 98.94 | 98.42 |
| Bra019956.1-P | Field mustard | cytosol | 98.41 | 97.89 |
| KRH61425 | Soybean | cytosol | 85.71 | 82.65 |
| KRH52104 | Soybean | cytosol | 85.19 | 82.14 |
| Solyc12g088320.1.1 | Tomato | cytosol | 80.42 | 81.28 |
| KRG88767 | Soybean | cytosol | 84.13 | 81.12 |
| PGSC0003DMT400030205 | Potato | cytosol | 79.89 | 80.75 |
| KRH05574 | Soybean | cytosol | 83.6 | 80.61 |
| VIT_18s0001g09040.t01 | Wine grape | cytosol | 83.07 | 79.7 |
| PGSC0003DMT400027522 | Potato | cytosol | 80.42 | 78.76 |
| Solyc04g077780.2.1 | Tomato | cytosol | 79.89 | 78.24 |
| Bra005003.1-P | Field mustard | cytosol | 56.08 | 53.27 |
| Bra026940.1-P | Field mustard | cytosol | 25.4 | 52.17 |
| Bra007189.1-P | Field mustard | cytosol | 54.5 | 51.24 |
| Bra033233.1-P | Field mustard | cytosol | 47.62 | 43.9 |
| Bra032650.1-P | Field mustard | cytosol | 47.62 | 43.9 |
| Bra014447.1-P | Field mustard | cytosol | 47.62 | 42.65 |
| Bra007586.1-P | Field mustard | cytosol | 47.62 | 41.47 |
| Bra004939.1-P | Field mustard | cytosol | 49.21 | 40.61 |
| Bra039313.1-P | Field mustard | cytosol | 48.15 | 39.74 |
| Bra000404.1-P | Field mustard | cytosol | 46.03 | 38.5 |
| Bra014721.1-P | Field mustard | cytosol, mitochondrion | 53.97 | 32.8 |
Protein Annotations
| EnsemblPlants:Bra018454.1 | EnsemblPlants:Bra018454.1-P | EnsemblPlantsGene:Bra018454 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF35 | PFAM:PF00412 |
| PFscan:PS50023 | ScanProsite:PS00478 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI0001B37591 | UniProt:M4DPL3 |
| MapMan:15.5.41 | : | : | : | : | : |
Description
AT1G10200 (E=1e-111) WLIM1 | WLIM1; transcription factor/ zinc ion binding
Coordinates
chrA05:+:8290005..8291094
Molecular Weight (calculated)
20986.1 Da
IEP (calculated)
8.905
GRAVY (calculated)
-0.607
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGDN AAKDKVDAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGDN AAKDKVDAA
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.