Factsheet for Bra000404.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68273	Canola	cytosol	99.56	99.56
CDX83389	Canola	cytosol	99.56	99.56
Bra004939.1-P	Field mustard	cytosol	84.96	83.84
Bra039313.1-P	Field mustard	cytosol	82.3	81.22
AT2G45800.1	Thale cress	cytosol	80.09	80.09
Bra007586.1-P	Field mustard	cytosol	69.91	72.81
Bra014447.1-P	Field mustard	cytosol	66.81	71.56
Bra033233.1-P	Field mustard	cytosol	59.73	65.85
KRH65108	Soybean	cytosol	59.73	65.53
Bra032650.1-P	Field mustard	cytosol	58.85	64.88
KRH48190	Soybean	cytosol	58.41	62.86
PGSC0003DMT400026590	Potato	cytosol	58.85	62.74
Solyc10g017520.2.1	Tomato	cytosol	58.41	62.26
KRH00704	Soybean	cytosol	57.96	60.65
PGSC0003DMT400000453	Potato	cytosol	59.29	60.63
Solyc01g094320.2.1	Tomato	cytosol	59.29	60.09
VIT_15s0046g03370.t01	Wine grape	cytosol	58.41	60.0
KRH40492	Soybean	cytosol	57.52	59.36
Bra005003.1-P	Field mustard	cytosol	49.12	55.78
PGSC0003DMT400055738	Potato	cytosol	55.31	55.07
Solyc05g049870.2.1	Tomato	cytosol	55.31	54.82
Bra007189.1-P	Field mustard	cytosol	46.9	52.74
Bra026940.1-P	Field mustard	cytosol	20.8	51.09
Bra018454.1-P	Field mustard	cytosol	38.5	46.03
Bra019956.1-P	Field mustard	cytosol	38.5	45.79
Bra014721.1-P	Field mustard	cytosol, mitochondrion	46.46	33.76

Protein Annotations

EnsemblPlants:Bra000404.1	EnsemblPlants:Bra000404.1-P	EnsemblPlantsGene:Bra000404	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI000253FEA3
UniProt:M4C876	MapMan:15.5.41	:	:	:	:

Description

AT2G45800 (E=8e-090) | LIM domain-containing protein

Coordinates

chrA03:-:10951206..10952114

Molecular Weight (calculated)

24933.1 Da

IEP (calculated)

6.769

GRAVY (calculated)

-0.694

Length

226 amino acids

Sequence
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKNCFRCSHC NGSLVISNYS SMDGVLYCKR HFEQLFKESV KSLHTGGKTD KTNDQLTRAP SKLSSFFSGT
101: RDKCATCQKT VYPLEKVTME GECFHKTCFK CAHSGCPLTH SSYASLNGVL YCKVHFNQLF LEKGSYNNVH QAAANHRRSA SSGASSPPHD NHKPEEEAVA
201: PEGEGEGKEE EEAPEAAGEE PEPKAE

Best Arabidopsis Sequence Match ( AT2G45800.1 )
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCTHC KGTLVISNYS SMDGVLYCKP HFEQLFKESG NYSKNFQAGK TEKPNDHLTR TPSKLSSFFS
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES

Arabidopsis Description

PLIM2ALIM domain-containing protein PLIM2a [Source:UniProtKB/Swiss-Prot;Acc:O80839]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.