Factsheet for Bra019956.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012779.1-P
Bra033495.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10200.1	Bra012779.1-P	AT4G15560.1	24104567
AT1G10200.1	Bra033495.1-P	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93448	Canola	cytosol	100.0	100.0
AT1G10200.1	Thale cress	cytosol	99.47	99.47
CDX94916	Canola	cytosol	98.42	98.94
Bra018454.1-P	Field mustard	cytosol	97.89	98.41
KRH61425	Soybean	cytosol	84.21	81.63
KRH52104	Soybean	cytosol	83.68	81.12
Solyc12g088320.1.1	Tomato	cytosol	78.95	80.21
KRG88767	Soybean	cytosol	82.63	80.1
PGSC0003DMT400030205	Potato	cytosol	78.42	79.68
KRH05574	Soybean	cytosol	82.11	79.59
VIT_18s0001g09040.t01	Wine grape	cytosol	81.58	78.68
PGSC0003DMT400027522	Potato	cytosol	78.95	77.72
Solyc04g077780.2.1	Tomato	cytosol	78.42	77.2
Bra005003.1-P	Field mustard	cytosol	55.26	52.76
Bra026940.1-P	Field mustard	cytosol	25.26	52.17
Bra007189.1-P	Field mustard	cytosol	53.68	50.75
Bra033233.1-P	Field mustard	cytosol	47.37	43.9
Bra032650.1-P	Field mustard	cytosol	47.37	43.9
Bra014447.1-P	Field mustard	cytosol	46.84	42.18
Bra007586.1-P	Field mustard	cytosol	46.84	41.01
Bra004939.1-P	Field mustard	cytosol	47.89	39.74
Bra039313.1-P	Field mustard	cytosol	46.84	38.86
Bra000404.1-P	Field mustard	cytosol	45.79	38.5
Bra014721.1-P	Field mustard	cytosol, mitochondrion	53.16	32.48

Protein Annotations

EnsemblPlants:Bra019956.1	EnsemblPlants:Bra019956.1-P	EnsemblPlantsGene:Bra019956	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF35	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI000253E99C	UniProt:M4DTW3
MapMan:15.5.41	:	:	:	:	:

Description

AT1G10200 (E=1e-114) WLIM1 | WLIM1; transcription factor/ zinc ion binding

Coordinates

chrA06:-:3516304..3517260

Molecular Weight (calculated)

21069.3 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.568

Length

190 amino acids

Sequence
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HRSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.