CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02173
KRH11287
KRH16140
KRH20991
KRH50940

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10200.1	KRH02173	AT4G15560.1	24104567
AT1G10200.1	KRH11287	AT4G15560.1	24104567
AT1G10200.1	KRH16140	AT4G15560.1	24104567
AT1G10200.1	KRH20991	AT4G15560.1	24104567
AT1G10200.1	KRH50940	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52104	Soybean	cytosol	98.47	98.47
KRH05574	Soybean	cytosol	92.86	92.86
KRG88767	Soybean	cytosol	91.84	91.84
VIT_18s0001g09040.t01	Wine grape	cytosol	88.78	88.32
Solyc12g088320.1.1	Tomato	cytosol	83.67	87.7
PGSC0003DMT400030205	Potato	cytosol	83.16	87.17
CDY20647	Canola	cytosol	83.16	86.24
Bra018454.1-P	Field mustard	cytosol	82.65	85.71
CDY31040	Canola	cytosol	82.65	85.71
CDX94916	Canola	cytosol	82.14	85.19
AT1G10200.1	Thale cress	cytosol	82.14	84.74
CDX93448	Canola	cytosol	81.63	84.21
Bra019956.1-P	Field mustard	cytosol	81.63	84.21
PGSC0003DMT400027522	Potato	cytosol	81.63	82.9
Solyc04g077780.2.1	Tomato	cytosol	81.63	82.9
KRH35659	Soybean	cytosol	71.43	77.78
KRH33303	Soybean	cytosol	18.88	67.27
KRH54438	Soybean	cytosol	65.31	66.67
KRG90348	Soybean	cytosol	22.96	62.5
KRH63478	Soybean	cytosol	64.8	62.25
KRH03352	Soybean	cytosol	64.8	60.77
KRH15005	Soybean	cytosol	57.65	59.79
KRH57029	Soybean	cytosol	64.8	59.07
KRG97787	Soybean	cytosol	58.16	57.58
KRH31081	Soybean	cytosol	58.67	57.5
KRH65108	Soybean	cytosol	47.96	45.63
KRH00704	Soybean	cytosol	49.49	44.91
KRH59846	Soybean	cytosol	51.02	44.64
KRH40492	Soybean	cytosol	49.49	44.29
KRH48190	Soybean	cytosol	47.45	44.29
KRH41147	Soybean	cytosol	50.51	43.42
KRG93772	Soybean	cytosol	14.8	39.73
KRH73124	Soybean	cytosol	33.16	38.69

Protein Annotations

EMBL:ACUP02002163	EMBL:BT089473	EnsemblPlants:KRH61425	EnsemblPlantsGene:GLYMA_04G046200	EntrezGene:100305720	Gene3D:2.10.110.10
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206
PANTHER:PTHR24206:SF35	PFAM:PF00412	PFscan:PS50023	ProteinID:KRH61425	ProteinID:KRH61425.1	ScanProsite:PS00478
SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0001B14EE1	UniProt:C6SWD0	MapMan:15.5.41	:

Description

hypothetical protein

Coordinates

chr4:+:3692249..3696563

Molecular Weight (calculated)

21817.0 Da

IEP (calculated)

8.541

GRAVY (calculated)

-0.634

Length

196 amino acids

Sequence
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQLFKRTG SLDKSFEGTP KIAKPEKTGE EKPAATKVSS
101: MFGGTRDKCA GCQKTVYPTE KVTVNGTPYH KSCFKCTHGG CVISPSNYIA HEGKLYCKHH HIQLIKEKGN LSQLEGDHEK STEEEKINGE VVAAET

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.