CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89416
KRH11729
KRH36722
KRH50476

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39900.1	KRG89416	AT4G19700.1	21798944
AT2G39900.1	KRH11729	AT4G19700.1	21798944
AT2G39900.1	KRH36722	AT4G19700.1	21798944
AT2G39900.1	KRH50476	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03280.t01	Wine grape	cytosol	87.83	87.83
KRG97787	Soybean	cytosol	91.53	87.37
KRH31081	Soybean	cytosol	90.48	85.5
GSMUA_Achr6P14980_001	Banana	cytosol	83.07	82.63
GSMUA_Achr10P...	Banana	cytosol	82.54	82.11
PGSC0003DMT400069763	Potato	cytosol	80.42	80.42
Solyc05g052780.2.1	Tomato	cytosol	80.42	80.42
Bra005003.1-P	Field mustard	cytosol	80.42	76.38
Os03t0266100-01	Rice	plasma membrane	78.84	76.02
CDX74822	Canola	cytosol	80.42	76.0
CDY20498	Canola	cytosol	80.42	76.0
CDY60999	Canola	cytosol	80.42	76.0
CDY27267	Canola	cytosol	79.89	75.12
CDX72203	Canola	cytosol	79.89	75.12
AT2G39900.1	Thale cress	cytosol	79.37	75.0
Bra007189.1-P	Field mustard	cytosol	79.37	74.63
EER95125	Sorghum	cytosol	77.78	74.62
Zm00001d028550_P001	Maize	extracellular, mitochondrion	76.72	73.23
TraesCS4B01G212600.1	Wheat	cytosol	76.72	71.08
TraesCS4D01G213600.1	Wheat	cytosol	76.72	71.08
AT3G55770.7	Thale cress	cytosol	79.37	64.38
KRH33303	Soybean	cytosol	16.93	58.18
KRG88767	Soybean	cytosol	59.79	57.65
KRH61425	Soybean	cytosol	59.79	57.65
KRH52104	Soybean	cytosol	59.79	57.65
KRH05574	Soybean	cytosol	59.26	57.14
KRH35659	Soybean	cytosol	53.97	56.67
CDY02959	Canola	mitochondrion	80.42	56.51
CDX76073	Canola	mitochondrion	79.89	55.93
KRH59846	Soybean	cytosol	65.08	54.91
KRH73124	Soybean	cytosol	48.68	54.76
KRH54438	Soybean	cytosol	55.56	54.69
KRH65108	Soybean	cytosol	59.26	54.37
KRH48190	Soybean	cytosol	59.79	53.81
KRH41147	Soybean	cytosol	64.02	53.07
KRH40492	Soybean	cytosol	59.79	51.6
KRH00704	Soybean	cytosol	58.73	51.39
KRG93772	Soybean	cytosol	19.58	50.68
KRH03352	Soybean	cytosol	55.56	50.24
KRG90348	Soybean	cytosol	19.05	50.0
KRH63478	Soybean	cytosol	53.44	49.51
Bra014721.1-P	Field mustard	cytosol, mitochondrion	79.89	48.55
KRH57029	Soybean	cytosol	54.5	47.91

Protein Annotations

EntrezGene:100807765	MapMan:15.5.41	Gene3D:2.10.110.10	EMBL:ACUP02008549	EnsemblPlantsGene:GLYMA_14G062700	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	UniProt:I1M7Y8	InterPro:IPR001781	ProteinID:KRH15003.1	ProteinID:KRH15004.1
EnsemblPlants:KRH15005	ProteinID:KRH15005	ProteinID:KRH15005.1	PFAM:PF00412	ScanProsite:PS00478	PFscan:PS50023
PANTHER:PTHR24206	PANTHER:PTHR24206:SF28	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0001BA81BA	InterPro:Znf_LIM

Description

hypothetical protein

Coordinates

chr14:+:5097487..5100212

Molecular Weight (calculated)

20853.8 Da

IEP (calculated)

9.012

GRAVY (calculated)

-0.531

Length

189 amino acids

Sequence
(BLAST)

001: MSFIGTQQKC EACDKTVYPV DQLSADGTAY HKACFKCSHC KGTLKLSNYS SMEGVLYCKP HYEQLFKETG SFKKNFQSPA KQAVKTTPEL TRSPSKAASM
101: FSGTQEKCAT CGKTAYPLEK VTVEGQAYHK SCFKCSHGSC PITPSNYAAL EGVLYCKHHF SQLFKEKGSY NHLIKSASIK REANSVPQA

Best Arabidopsis Sequence Match ( AT2G39900.1 )
(BLAST)

001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES

Arabidopsis Description

WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.