Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005003.1-P | Field mustard | cytosol | 99.5 | 100.0 |
| CDX74822 | Canola | cytosol | 100.0 | 100.0 |
| CDY60999 | Canola | cytosol | 97.5 | 97.5 |
| AT2G39900.1 | Thale cress | cytosol | 92.0 | 92.0 |
| CDY27267 | Canola | cytosol | 88.5 | 88.06 |
| CDX72203 | Canola | cytosol | 88.0 | 87.56 |
| VIT_13s0019g03280.t01 | Wine grape | cytosol | 79.5 | 84.13 |
| KRG97787 | Soybean | cytosol | 80.5 | 81.31 |
| KRH15005 | Soybean | cytosol | 76.0 | 80.42 |
| KRH31081 | Soybean | cytosol | 80.0 | 80.0 |
| Solyc05g052780.2.1 | Tomato | cytosol | 75.5 | 79.89 |
| PGSC0003DMT400069763 | Potato | cytosol | 75.5 | 79.89 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 75.5 | 79.47 |
| GSMUA_Achr10P... | Banana | cytosol | 75.5 | 79.47 |
| Os03t0266100-01 | Rice | plasma membrane | 75.0 | 76.53 |
| EER95125 | Sorghum | cytosol | 75.0 | 76.14 |
| Zm00001d028550_P001 | Maize | extracellular, mitochondrion | 75.0 | 75.76 |
| TraesCS4B01G212600.1 | Wheat | cytosol | 74.5 | 73.04 |
| TraesCS4D01G213600.1 | Wheat | cytosol | 74.0 | 72.55 |
| CDY02959 | Canola | mitochondrion | 88.5 | 65.8 |
| CDX76073 | Canola | mitochondrion | 88.0 | 65.19 |
| CDX86962 | Canola | cytosol | 41.5 | 60.58 |
| CDY38028 | Canola | cytosol | 58.5 | 57.07 |
| CDY45697 | Canola | cytosol | 51.5 | 56.91 |
| CDY20647 | Canola | cytosol | 53.5 | 56.61 |
| CDY01571 | Canola | cytosol | 58.0 | 56.59 |
| CDX89105 | Canola | cytosol | 59.5 | 56.4 |
| CDY15152 | Canola | cytosol | 57.5 | 56.1 |
| CDX90059 | Canola | cytosol | 57.5 | 56.1 |
| CDY31040 | Canola | cytosol | 53.0 | 56.08 |
| CDX71757 | Canola | cytosol | 60.5 | 56.02 |
| CDY56926 | Canola | cytosol | 59.0 | 55.66 |
| CDX94916 | Canola | cytosol | 52.5 | 55.56 |
| CDX93448 | Canola | cytosol | 52.5 | 55.26 |
| CDY48936 | Canola | cytosol | 59.5 | 54.59 |
| CDY27358 | Canola | cytosol | 60.5 | 52.61 |
| CDY37066 | Canola | cytosol | 60.0 | 52.4 |
| CDY18899 | Canola | cytosol | 58.5 | 51.54 |
| CDX74767 | Canola | cytosol | 59.0 | 51.53 |
| CDX95666 | Canola | cytosol | 56.5 | 49.56 |
| CDY68273 | Canola | cytosol | 56.0 | 49.56 |
| CDX83389 | Canola | cytosol | 56.0 | 49.56 |
| KRH73124 | Soybean | cytosol | 39.5 | 47.02 |
Protein Annotations
| EnsemblPlants:CDY20498 | EnsemblPlantsGene:GSBRNA2T00012601001 | Gene3D:2.10.110.10 | GO:A0A078CD86 | InterPro:IPR001781 | InterPro:Znf_LIM |
| PANTHER:PTHR24206 | PANTHER:PTHR24206:SF28 | PFAM:PF00412 | PFscan:PS50023 | ProteinID:CDY20498 | ProteinID:CDY20498.1 |
| ScanProsite:PS00478 | SEG:seg | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI0004EE6300 | UniProt:A0A078CD86 |
| MapMan:15.5.41 | : | : | : | : | : |
Description
BnaC04g05460DBnaA05g05680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CD86]
Coordinates
chrLK032108:+:530392..531902
Molecular Weight (calculated)
21905.2 Da
IEP (calculated)
8.707
GRAVY (calculated)
-0.352
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFTGTQQKC RACEKTVYPM ELLSADGVPF HKSCFKCSHC KSTLQLSNYS SMEGVLYCKP HFEQLFKETG SFNKNFQSPA KPLTDKPTPE LTRTPSRVAG
101: MFSGTQDKCA TCSKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRSAAAATAA AAAVEAVPES
101: MFSGTQDKCA TCSKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRSAAAATAA AAAVEAVPES
001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
Arabidopsis Description
WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.