CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48936	Canola	cytosol	96.76	95.87
Bra007586.1-P	Field mustard	cytosol	96.3	95.85
CDX89105	Canola	cytosol	87.04	89.1
CDY56926	Canola	cytosol	86.57	88.21
CDY45697	Canola	cytosol	72.22	86.19
AT3G61230.1	Thale cress	cytosol	83.33	84.51
CDY18899	Canola	cytosol	75.0	71.37
CDX74767	Canola	cytosol	75.46	71.18
CDY27358	Canola	cytosol	75.46	70.87
CDY37066	Canola	cytosol	75.0	70.74
VIT_15s0046g03370.t01	Wine grape	cytosol	71.3	70.0
CDX90059	Canola	cytosol	65.74	69.27
CDY15152	Canola	cytosol	65.74	69.27
CDY38028	Canola	cytosol	65.28	68.78
CDX83389	Canola	cytosol	71.76	68.58
CDY68273	Canola	cytosol	71.76	68.58
CDY01571	Canola	cytosol	64.81	68.29
CDX95666	Canola	cytosol	71.76	67.98
CDX86962	Canola	cytosol	43.06	67.88
PGSC0003DMT400026590	Potato	cytosol	66.2	67.45
KRH65108	Soybean	cytosol	63.89	66.99
Solyc10g017520.2.1	Tomato	cytosol	65.28	66.51
KRH00704	Soybean	cytosol	66.2	66.2
KRH48190	Soybean	cytosol	63.89	65.71
KRH40492	Soybean	cytosol	65.74	64.84
PGSC0003DMT400000453	Potato	cytosol	65.28	63.8
Solyc01g094320.2.1	Tomato	cytosol	64.81	62.78
CDY20498	Canola	cytosol	56.02	60.5
CDX74822	Canola	cytosol	56.02	60.5
Solyc05g049870.2.1	Tomato	cytosol	62.5	59.21
PGSC0003DMT400055738	Potato	cytosol	62.04	59.03
CDY60999	Canola	cytosol	54.63	59.0
CDX72203	Canola	cytosol	52.31	56.22
CDY27267	Canola	cytosol	52.31	56.22
CDY20647	Canola	cytosol	43.52	49.74
CDY31040	Canola	cytosol	43.06	49.21
CDX94916	Canola	cytosol	42.59	48.68
CDX93448	Canola	cytosol	42.59	48.42
CDY02959	Canola	mitochondrion	53.24	42.75
CDX76073	Canola	mitochondrion	52.31	41.85

Protein Annotations

EnsemblPlants:CDX71757	EnsemblPlantsGene:GSBRNA2T00155455001	Gene3D:2.10.110.10	GO:A0A078C4C8	InterPro:IPR001781	InterPro:Znf_LIM
PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412	PFscan:PS50023	ProteinID:CDX71757	ProteinID:CDX71757.1
ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0004EEA39A	MapMan:15.5.41

Description

BnaC08g31170D

Coordinates

chrLK031795:+:332997..333967

Molecular Weight (calculated)

24050.1 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.638

Length

216 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC KACDKTVYVM DLMTLEGMPY HKSCFRCSHC NGTLVISNYS SMDGVLYCKP HFEQLFKESG NFSKNFQTAG KTDKSNEMTR APSKLSSFFS
101: GTQDKCAACK KTVYPLEKIT MEGESYHKTC FRCAHGGCPL THSSYAALNG ILYCKVHFNQ LFLEKGNYSH VLAAANHKRT SEEDKTETNE EHESEANPTE
201: EEASGVPPEA GEEHDS

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.