CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01571	Canola	cytosol	90.51	60.49
CDY38028	Canola	cytosol	89.78	60.0
Bra033233.1-P	Field mustard	cytosol	88.32	59.02
CDX90059	Canola	cytosol	88.32	59.02
CDY15152	Canola	cytosol	87.59	58.54
AT1G01780.1	Thale cress	cytosol	83.21	55.61
Solyc10g017520.2.1	Tomato	cytosol	70.07	45.28
CDX89105	Canola	cytosol	69.34	45.02
PGSC0003DMT400026590	Potato	cytosol	69.34	44.81
CDY56926	Canola	cytosol	67.88	43.87
CDY45697	Canola	cytosol	57.66	43.65
KRH65108	Soybean	cytosol	64.96	43.2
CDX71757	Canola	cytosol	67.88	43.06
KRH48190	Soybean	cytosol	65.69	42.86
CDY48936	Canola	cytosol	67.88	42.66
CDY18899	Canola	cytosol	70.07	42.29
VIT_15s0046g03370.t01	Wine grape	cytosol	67.88	42.27
Solyc01g094320.2.1	Tomato	cytosol	68.61	42.15
PGSC0003DMT400000453	Potato	cytosol	67.88	42.08
CDX74767	Canola	cytosol	70.07	41.92
CDY27358	Canola	cytosol	70.07	41.74
KRH40492	Soybean	cytosol	66.42	41.55
CDX74822	Canola	cytosol	60.58	41.5
CDY20498	Canola	cytosol	60.58	41.5
CDY37066	Canola	cytosol	69.34	41.48
PGSC0003DMT400055738	Potato	cytosol	68.61	41.41
KRH00704	Soybean	cytosol	64.96	41.2
CDY60999	Canola	cytosol	59.85	41.0
Solyc05g049870.2.1	Tomato	cytosol	67.88	40.79
CDX72203	Canola	cytosol	56.2	38.31
CDY27267	Canola	cytosol	56.2	38.31
CDY68273	Canola	cytosol	61.31	37.17
CDX83389	Canola	cytosol	61.31	37.17
CDY20647	Canola	cytosol	51.09	37.04
CDX95666	Canola	cytosol	61.31	36.84
CDX94916	Canola	cytosol	50.37	36.51
CDY31040	Canola	cytosol	50.37	36.51
CDX93448	Canola	cytosol	50.37	36.32
CDX76073	Canola	mitochondrion	56.93	28.89
CDY02959	Canola	mitochondrion	56.2	28.62

Protein Annotations

EnsemblPlants:CDX86962	EnsemblPlantsGene:GSBRNA2T00145785001	Gene3D:2.10.110.10	GO:A0A078DD13	InterPro:IPR001781	InterPro:Znf_LIM
PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412	PFscan:PS50023	ProteinID:CDX86962	ProteinID:CDX86962.1
ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0004EEE9D6	MapMan:15.5.41	:

Description

BnaC03g52320D

Coordinates

chrLK031848:+:879796..881797

Molecular Weight (calculated)

15302.7 Da

IEP (calculated)

7.832

GRAVY (calculated)

-0.161

Length

137 amino acids

Sequence
(BLAST)

001: MSFTGTTDKC NVCDKTVYVM DMLSIEGMPY HKSCFKCTHC KGTLVMSNYS SMDGVLYCKT HFDQLFKESG NFSKNFQPGK TEKPEQSKTP SKISSIFCGT
101: QDKCAACDKT VYPLEKVCLC SLQLLTSLND PLLMVLI

Best Arabidopsis Sequence Match ( AT1G01780.1 )
(BLAST)

001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES

Arabidopsis Description

PLIM2BLIM domain-containing protein PLIM2b [Source:UniProtKB/Swiss-Prot;Acc:Q1ECF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.