Factsheet for Bra033233.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90059	Canola	cytosol	100.0	100.0
CDY15152	Canola	cytosol	99.02	99.02
Bra032650.1-P	Field mustard	cytosol	95.12	95.12
AT1G01780.1	Thale cress	cytosol	93.66	93.66
CDX86962	Canola	cytosol	59.02	88.32
Bra014447.1-P	Field mustard	cytosol	69.76	67.77
KRH65108	Soybean	cytosol	67.32	66.99
KRH48190	Soybean	cytosol	67.32	65.71
Bra007586.1-P	Field mustard	cytosol	69.27	65.44
Solyc10g017520.2.1	Tomato	cytosol	66.34	64.15
PGSC0003DMT400026590	Potato	cytosol	66.34	64.15
Bra039313.1-P	Field mustard	cytosol	71.22	63.76
Bra004939.1-P	Field mustard	cytosol	70.73	63.32
KRH40492	Soybean	cytosol	67.32	63.01
KRH00704	Soybean	cytosol	66.34	62.96
VIT_15s0046g03370.t01	Wine grape	cytosol	66.34	61.82
PGSC0003DMT400000453	Potato	cytosol	65.85	61.09
Solyc01g094320.2.1	Tomato	cytosol	66.34	60.99
Bra026940.1-P	Field mustard	cytosol	26.83	59.78
Bra000404.1-P	Field mustard	cytosol	65.85	59.73
Bra005003.1-P	Field mustard	cytosol	56.1	57.79
PGSC0003DMT400055738	Potato	cytosol	63.9	57.71
Solyc05g049870.2.1	Tomato	cytosol	63.41	57.02
Bra007189.1-P	Field mustard	cytosol	52.2	53.23
Bra018454.1-P	Field mustard	cytosol	43.9	47.62
Bra019956.1-P	Field mustard	cytosol	43.9	47.37
Bra014721.1-P	Field mustard	cytosol, mitochondrion	53.17	35.05

Protein Annotations

EnsemblPlants:Bra033233.1	EnsemblPlants:Bra033233.1-P	EnsemblPlantsGene:Bra033233	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	ncoils:Coil	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22
PFAM:PF00412	PFscan:PS50023	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716
UniParc:UPI0002545336	UniProt:M4EWP9	MapMan:15.5.41	:	:	:

Description

AT1G01780 (E=1e-107) | LIM domain-containing protein

Coordinates

chrA10:+:4752496..4753637

Molecular Weight (calculated)

22872.1 Da

IEP (calculated)

7.426

GRAVY (calculated)

-0.512

Length

205 amino acids

Sequence
(BLAST)

001: MSFTGTTDKC NVCDKTVYVM DMLSIEGMPY HKSCFKCTHC KGTLVMSNYS SMDGVLYCKT HFDQLFKESG NFSKNFQPGK TEKPEHTKTP SKISSIFCGT
101: QDKCAACEKT VYPLEKVQME GECFHKTCFR CAHGGCTLTH SSYASLDGVL YCRHHFNQLF LEKGNYAHVL QAANHRRTAS GNSLPPEPTE EVAVEAKEEN
201: GVSQS

Best Arabidopsis Sequence Match ( AT1G01780.1 )
(BLAST)

001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES

Arabidopsis Description

PLIM2BLIM domain-containing protein PLIM2b [Source:UniProtKB/Swiss-Prot;Acc:Q1ECF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.