Factsheet for Bra007586.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48936	Canola	cytosol	100.0	99.54
CDX71757	Canola	cytosol	95.85	96.3
Bra014447.1-P	Field mustard	cytosol	87.56	90.05
AT3G61230.1	Thale cress	cytosol	82.95	84.51
Bra004939.1-P	Field mustard	cytosol	76.5	72.49
Bra039313.1-P	Field mustard	cytosol	75.58	71.62
Bra000404.1-P	Field mustard	cytosol	72.81	69.91
Bra033233.1-P	Field mustard	cytosol	65.44	69.27
Bra032650.1-P	Field mustard	cytosol	64.98	68.78
VIT_15s0046g03370.t01	Wine grape	cytosol	68.66	67.73
KRH65108	Soybean	cytosol	63.59	66.99
PGSC0003DMT400026590	Potato	cytosol	64.98	66.51
KRH48190	Soybean	cytosol	63.59	65.71
Solyc10g017520.2.1	Tomato	cytosol	64.06	65.57
KRH00704	Soybean	cytosol	64.52	64.81
PGSC0003DMT400000453	Potato	cytosol	64.98	63.8
KRH40492	Soybean	cytosol	64.06	63.47
Solyc01g094320.2.1	Tomato	cytosol	64.52	62.78
Bra005003.1-P	Field mustard	cytosol	54.38	59.3
Solyc05g049870.2.1	Tomato	cytosol	62.21	59.21
PGSC0003DMT400055738	Potato	cytosol	61.75	59.03
Bra026940.1-P	Field mustard	cytosol	24.42	57.61
Bra007189.1-P	Field mustard	cytosol	52.07	56.22
Bra018454.1-P	Field mustard	cytosol	41.47	47.62
Bra019956.1-P	Field mustard	cytosol	41.01	46.84
Bra014721.1-P	Field mustard	cytosol, mitochondrion	52.07	36.33

Protein Annotations

EnsemblPlants:Bra007586.1	EnsemblPlants:Bra007586.1-P	EnsemblPlantsGene:Bra007586	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002542947
UniProt:M4CTP2	MapMan:15.5.41	:	:	:	:

Description

AT3G61230 (E=1e-096) | LIM domain-containing protein

Coordinates

chrA09:-:29905935..29906827

Molecular Weight (calculated)

24243.3 Da

IEP (calculated)

6.222

GRAVY (calculated)

-0.652

Length

217 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC KACDKTVYVM DLMTLEGMPY HKSCFRCSHC NGTLVISNYS SMDGVLYCKP HFEQLFKESG NFSKNFHTGK TEKSNDVTRA PSKLSSFFSG
101: TQDKCAACKK TVYPLEKITM EGESYHKTCF RCAHGGCPLT HSSYAALNGI LYCKVHFNQL FLEKGNYNHV LAAANHKRSS EEDKTETNEE HESEANPTEE
201: EEEASGVPLE AGEEHDS

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.