Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45697 | Canola | cytosol | 73.71 | 86.74 |
| CDY56926 | Canola | cytosol | 85.92 | 86.32 |
| Bra014447.1-P | Field mustard | cytosol | 84.51 | 85.31 |
| CDX89105 | Canola | cytosol | 84.51 | 85.31 |
| CDX71757 | Canola | cytosol | 84.51 | 83.33 |
| CDY48936 | Canola | cytosol | 84.98 | 83.03 |
| Bra007586.1-P | Field mustard | cytosol | 84.51 | 82.95 |
| AT2G45800.1 | Thale cress | cytosol | 75.59 | 71.24 |
| AT1G01780.1 | Thale cress | cytosol | 65.26 | 67.8 |
| KRH48190 | Soybean | cytosol | 65.73 | 66.67 |
| KRH00704 | Soybean | cytosol | 67.61 | 66.67 |
| KRH65108 | Soybean | cytosol | 63.85 | 66.02 |
| KRH40492 | Soybean | cytosol | 67.14 | 65.3 |
| VIT_15s0046g03370.t01 | Wine grape | cytosol | 67.14 | 65.0 |
| PGSC0003DMT400026590 | Potato | cytosol | 63.38 | 63.68 |
| Solyc10g017520.2.1 | Tomato | cytosol | 62.44 | 62.74 |
| PGSC0003DMT400000453 | Potato | cytosol | 63.38 | 61.09 |
| Solyc01g094320.2.1 | Tomato | cytosol | 63.38 | 60.54 |
| PGSC0003DMT400055738 | Potato | cytosol | 61.97 | 58.15 |
| Solyc05g049870.2.1 | Tomato | cytosol | 61.5 | 57.46 |
| AT2G39900.1 | Thale cress | cytosol | 51.64 | 55.0 |
| AT3G55770.7 | Thale cress | cytosol | 50.7 | 46.35 |
| AT1G10200.1 | Thale cress | cytosol | 40.38 | 45.26 |
Protein Annotations
| MapMan:15.5.41 | Gene3D:2.10.110.10 | EntrezGene:825295 | UniProt:A0A178VCP6 | EMBL:AB493659 | ProteinID:AEE80176.1 |
| ArrayExpress:AT3G61230 | EnsemblPlantsGene:AT3G61230 | RefSeq:AT3G61230 | TAIR:AT3G61230 | RefSeq:AT3G61230-TAIR-G | EnsemblPlants:AT3G61230.1 |
| TAIR:AT3G61230.1 | Unigene:At.34316 | EMBL:BT022103 | ProteinID:CAB71053.1 | GO:GO:0003674 | GO:GO:0003779 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046872 | GO:GO:0051015 |
| GO:GO:0051017 | InterPro:IPR001781 | RefSeq:NP_191682.2 | ProteinID:OAP03438.1 | PFAM:PF00412 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00478 | PFscan:PS50023 | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF22 | UniProt:Q500W4 |
| SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI000034F045 | InterPro:Znf_LIM | SEG:seg | : |
Description
PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
Coordinates
chr3:-:22664425..22665690
Molecular Weight (calculated)
23765.7 Da
IEP (calculated)
6.494
GRAVY (calculated)
-0.646
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.