Factsheet for Solyc05g049870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055738	Potato	cytosol	95.61	96.04
Solyc10g017520.2.1	Tomato	cytosol	72.37	77.83
Solyc01g094320.2.1	Tomato	cytosol	74.12	75.78
VIT_15s0046g03370.t01	Wine grape	cytosol	65.79	68.18
CDX86962	Canola	cytosol	40.79	67.88
Solyc05g052780.2.1	Tomato	cytosol	53.95	65.08
Bra032650.1-P	Field mustard	cytosol	57.89	64.39
CDY38028	Canola	cytosol	57.89	64.39
CDY56926	Canola	cytosol	59.65	64.15
CDY01571	Canola	cytosol	57.46	63.9
KRH65108	Soybean	cytosol	57.46	63.59
Bra014447.1-P	Field mustard	cytosol	58.77	63.51
CDX89105	Canola	cytosol	58.77	63.51
Bra033233.1-P	Field mustard	cytosol	57.02	63.41
CDX90059	Canola	cytosol	57.02	63.41
CDY15152	Canola	cytosol	57.02	63.41
AT1G01780.1	Thale cress	cytosol	57.02	63.41
CDY45697	Canola	cytosol	50.0	62.98
CDX71757	Canola	cytosol	59.21	62.5
KRH48190	Soybean	cytosol	57.46	62.38
Bra007586.1-P	Field mustard	cytosol	59.21	62.21
CDY48936	Canola	cytosol	59.21	61.93
AT3G61230.1	Thale cress	cytosol	57.46	61.5
KRH00704	Soybean	cytosol	57.02	60.19
KRH40492	Soybean	cytosol	57.02	59.36
CDY18899	Canola	cytosol	58.77	59.03
CDY37066	Canola	cytosol	59.21	58.95
AT2G45800.1	Thale cress	cytosol	58.33	58.85
CDY27358	Canola	cytosol	59.21	58.7
CDX74767	Canola	cytosol	58.77	58.52
Bra039313.1-P	Field mustard	cytosol	58.77	58.52
Bra004939.1-P	Field mustard	cytosol	58.77	58.52
CDY68273	Canola	cytosol	55.26	55.75
CDX83389	Canola	cytosol	55.26	55.75
Bra000404.1-P	Field mustard	cytosol	54.82	55.31
CDX95666	Canola	cytosol	55.26	55.26
Solyc08g080740.2.1	Tomato	cytosol	45.61	53.61
Solyc08g007940.2.1	Tomato	cytosol	47.81	52.91
Solyc06g071310.2.1	Tomato	cytosol	40.79	51.96
Solyc12g088320.1.1	Tomato	cytosol	41.67	50.8
Solyc03g114000.2.1	Tomato	cytosol	41.23	49.74
Solyc11g044740.1.1	Tomato	cytosol	40.79	48.19
Solyc04g077780.2.1	Tomato	cytosol	39.91	47.15

Protein Annotations

EnsemblPlants:Solyc05g049870.2.1	EnsemblPlantsGene:Solyc05g049870.2	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412	PFscan:PS50023
ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002766E78	UniProt:K4C120
MapMan:15.5.41	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:59617863..59620425

Molecular Weight (calculated)

25168.1 Da

IEP (calculated)

6.166

GRAVY (calculated)

-0.733

Length

228 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC KACDKTVYFV DLLSADGATF HKSCFKCSHC KGTLVMSNYS SMDGVLYCKP HFEQLFKESG NFSKNFQTSS KSEKESSLAK APSKVSAMFS
101: GTQDKCAACS KTVYPLEKVI LEGEAFHKSC FKCAHGGCAL THATYAALDG VLYCKHHFAQ LFMEKGSYQH VLKATTNKKS TVTPVDDDDN NNNNNNNDDD
201: DKPANEEDKA NDHDKADEKE PNDENEQS

Best Arabidopsis Sequence Match ( AT2G45800.1 )
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCTHC KGTLVISNYS SMDGVLYCKP HFEQLFKESG NYSKNFQAGK TEKPNDHLTR TPSKLSSFFS
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES

Arabidopsis Description

PLIM2ALIM domain-containing protein PLIM2a [Source:UniProtKB/Swiss-Prot;Acc:O80839]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.