Factsheet for Solyc08g007940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014797	Potato	cytosol	78.16	95.83
Solyc08g080740.2.1	Tomato	cytosol	66.5	70.62
GSMUA_Achr1P03020_001	Banana	cytosol	54.85	63.48
Solyc05g052780.2.1	Tomato	cytosol	54.85	59.79
GSMUA_Achr4P29420_001	Banana	cytosol	57.28	58.71
GSMUA_Achr2P11440_001	Banana	cytosol	56.31	58.0
EES05836	Sorghum	cytosol	55.83	57.5
GSMUA_Achr2P18580_001	Banana	cytosol	50.97	56.45
VIT_02s0025g03980.t01	Wine grape	cytosol	58.74	56.28
EES12556	Sorghum	cytosol	55.34	56.16
Zm00001d051262_P001	Maize	cytosol	56.31	56.04
GSMUA_Achr5P20680_001	Banana	cytosol	54.37	55.72
GSMUA_Achr11P...	Banana	cytosol	53.88	55.5
Os04t0532500-01	Rice	plasma membrane	53.4	54.73
Zm00001d002844_P003	Maize	cytosol	54.37	54.37
Zm00001d025926_P001	Maize	cytosol	53.88	54.15
TraesCS6B01G265100.1	Wheat	cytosol	54.37	54.11
KRH59846	Soybean	cytosol	58.74	54.02
TraesCS2A01G370800.1	Wheat	cytosol	52.91	53.69
TraesCS2D01G367100.1	Wheat	cytosol	52.91	53.17
KRH41147	Soybean	cytosol	58.74	53.07
TraesCS2B01G388000.1	Wheat	cytosol	52.91	52.91
TraesCS6A01G236600.1	Wheat	cytosol	54.37	52.83
TraesCS6D01G219200.1	Wheat	cytosol	54.37	52.58
TraesCS1A01G173600.1	Wheat	cytosol	50.49	52.0
Os02t0641000-00	Rice	mitochondrion	38.84	51.95
Solyc10g017520.2.1	Tomato	cytosol	53.4	51.89
Solyc01g094320.2.1	Tomato	cytosol	55.34	51.12
TraesCS1D01G165200.1	Wheat	cytosol	50.97	50.72
Solyc06g071310.2.1	Tomato	cytosol	43.69	50.28
TraesCS1B01G190800.1	Wheat	cytosol	50.49	50.0
Solyc05g049870.2.1	Tomato	cytosol	52.91	47.81
Zm00001d017382_P001	Maize	cytosol	56.8	47.37
Solyc11g044740.1.1	Tomato	cytosol	43.69	46.63
Solyc03g114000.2.1	Tomato	cytosol	42.72	46.56
Solyc12g088320.1.1	Tomato	cytosol	40.78	44.92
Solyc04g077780.2.1	Tomato	cytosol	41.75	44.56
HORVU6Hr1G060580.5	Barley	plastid	38.84	38.84
HORVU5Hr1G031550.3	Barley	cytosol	15.53	32.32

Protein Annotations

EnsemblPlants:Solyc08g007940.2.1	EnsemblPlantsGene:Solyc08g007940.2	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF54	PFAM:PF00412	PFscan:PS50023
ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI000276CA53	UniProt:K4CIS9
MapMan:15.5.41	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:2443295..2446883

Molecular Weight (calculated)

22522.3 Da

IEP (calculated)

7.595

GRAVY (calculated)

-0.616

Length

206 amino acids

Sequence
(BLAST)

001: MSSFGTQTKC KACDKTVYAA EVISAGGVNY HNTCFRCSHC NGRLALSNYS CLDGTLFCKP HFEQLLKEKG SGALKSSSLG RNNDLNRSPS KLSSLFCGTQ
101: EKCASCKKTV YPLEKVTVDG EFYHQSCFKC AHGGCKLTTS SYAALDGLVY CKPHFSQLFK EKGSYNHLTT ATNKKNHSAD EHEEGSTTTT TDVDEPPQPP
201: VEETQD

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.