Factsheet for Zm00001d051262_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05836	Sorghum	cytosol	89.37	92.5
TraesCS6B01G265100.1	Wheat	cytosol	82.61	82.61
TraesCS6A01G236600.1	Wheat	cytosol	82.61	80.66
TraesCS6D01G219200.1	Wheat	cytosol	82.61	80.28
Zm00001d017382_P001	Maize	cytosol	91.79	76.92
GSMUA_Achr1P03020_001	Banana	cytosol	64.73	75.28
Zm00001d002844_P003	Maize	cytosol	73.43	73.79
Zm00001d025926_P001	Maize	cytosol	71.98	72.68
GSMUA_Achr4P29420_001	Banana	cytosol	70.53	72.64
GSMUA_Achr11P...	Banana	cytosol	67.15	69.5
GSMUA_Achr2P18580_001	Banana	cytosol	62.32	69.35
GSMUA_Achr5P20680_001	Banana	cytosol	66.67	68.66
GSMUA_Achr2P11440_001	Banana	cytosol	66.18	68.5
Os02t0641000-00	Rice	mitochondrion	46.86	62.99
Zm00001d028550_P001	Maize	extracellular, mitochondrion	57.49	60.1
VIT_02s0025g03980.t01	Wine grape	cytosol	60.87	58.6
PGSC0003DMT400014797	Potato	cytosol	46.86	57.74
Solyc08g007940.2.1	Tomato	cytosol	56.04	56.31
Solyc08g080740.2.1	Tomato	cytosol	52.66	56.19
KRH59846	Soybean	cytosol	60.39	55.8
KRH41147	Soybean	cytosol	59.42	53.95
HORVU6Hr1G060580.5	Barley	plastid	50.24	50.49
Zm00001d041725_P001	Maize	cytosol	45.41	47.96
Zm00001d035304_P001	Maize	mitochondrion	44.44	47.18
PGSC0003DMT400007915	Potato	cytosol	47.83	44.39
Zm00001d037252_P002	Maize	cytosol	43.96	6.26

Protein Annotations

EnsemblPlants:Zm00001d051262_P001	EnsemblPlants:Zm00001d051262_T001	EnsemblPlantsGene:Zm00001d051262	EntrezGene:100381874	Gene3D:2.10.110.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	ncoils:Coil	PANTHER:PTHR24206
PANTHER:PTHR24206:SF22	PFAM:PF00412	PFscan:PS50023	ProteinID:AQK53922.1	ScanProsite:PS00478	SEG:seg
SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI000221CF69	UniProt:K7U2J9	MapMan:15.5.41	:

Description

LIM-transcription factor 8LIM domain-containing protein PLIM2b

Coordinates

chr4:-:151028968..151030729

Molecular Weight (calculated)

22219.1 Da

IEP (calculated)

7.602

GRAVY (calculated)

-0.377

Length

207 amino acids

Sequence
(BLAST)

001: MSFTGTQDKC KACDKTVHFI DLLTADGVSY HKTCFKCSHC KGVLSISSYS SMDGVLYCKT HFEQLFKETG NFSKKFQGGG GASSNKNDPA KAPSKLSSAF
101: SGTQDKCAAC QKTVYPLEKM TLEGESYHKG CFKCSHGGCI LTTSSYAALN GILYCKIHFS QLFKEKGSYN HLIETAQTKK NEAAEAAEEP SVDACAAAEA
201: EASAESA

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.