Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P03020_001 | Banana | cytosol | 57.67 | 69.66 |
| GSMUA_Achr4P29420_001 | Banana | cytosol | 63.72 | 68.16 |
| GSMUA_Achr2P18580_001 | Banana | cytosol | 58.14 | 67.2 |
| VIT_13s0019g03280.t01 | Wine grape | cytosol | 57.67 | 65.61 |
| EES05836 | Sorghum | cytosol | 59.07 | 63.5 |
| KRH59846 | Soybean | cytosol | 66.05 | 63.39 |
| GSMUA_Achr2P11440_001 | Banana | cytosol | 57.67 | 62.0 |
| Zm00001d002844_P003 | Maize | cytosol | 59.07 | 61.65 |
| EES12556 | Sorghum | cytosol | 58.14 | 61.58 |
| TraesCS2A01G370800.1 | Wheat | cytosol | 58.14 | 61.58 |
| GSMUA_Achr11P... | Banana | cytosol | 57.21 | 61.5 |
| Zm00001d025926_P001 | Maize | cytosol | 58.6 | 61.46 |
| KRH41147 | Soybean | cytosol | 65.12 | 61.4 |
| TraesCS2D01G367100.1 | Wheat | cytosol | 58.14 | 60.98 |
| Zm00001d051262_P001 | Maize | cytosol | 58.6 | 60.87 |
| Solyc08g080740.2.1 | Tomato | cytosol | 54.88 | 60.82 |
| Os04t0532500-01 | Rice | plasma membrane | 56.74 | 60.7 |
| VIT_15s0046g03370.t01 | Wine grape | cytosol | 61.86 | 60.45 |
| TraesCS6B01G265100.1 | Wheat | cytosol | 58.14 | 60.39 |
| GSMUA_Achr5P20680_001 | Banana | cytosol | 56.28 | 60.2 |
| TraesCS2B01G388000.1 | Wheat | cytosol | 57.67 | 60.19 |
| TraesCS6A01G236600.1 | Wheat | cytosol | 58.6 | 59.43 |
| PGSC0003DMT400014797 | Potato | cytosol | 46.05 | 58.93 |
| Solyc08g007940.2.1 | Tomato | cytosol | 56.28 | 58.74 |
| TraesCS6D01G219200.1 | Wheat | cytosol | 58.14 | 58.69 |
| TraesCS1A01G173600.1 | Wheat | cytosol | 53.49 | 57.5 |
| TraesCS1D01G165200.1 | Wheat | cytosol | 54.88 | 57.0 |
| TraesCS1B01G190800.1 | Wheat | cytosol | 54.42 | 56.25 |
| VIT_17s0000g07820.t01 | Wine grape | cytosol | 46.51 | 54.95 |
| Os02t0641000-00 | Rice | mitochondrion | 37.21 | 51.95 |
| Zm00001d017382_P001 | Maize | cytosol | 59.07 | 51.42 |
| VIT_18s0001g09040.t01 | Wine grape | cytosol | 46.51 | 50.76 |
| VIT_03s0091g01010.t01 | Wine grape | cytosol | 45.58 | 50.52 |
| PGSC0003DMT400007915 | Potato | cytosol | 49.3 | 47.53 |
| HORVU6Hr1G060580.5 | Barley | plastid | 38.14 | 39.81 |
| HORVU5Hr1G031550.3 | Barley | cytosol | 15.81 | 34.34 |
Protein Annotations
| EntrezGene:100242820 | wikigene:100242820 | MapMan:15.5.41 | Gene3D:2.10.110.10 | ProteinID:CBI34710 | ProteinID:CBI34710.3 |
| UniProt:D7TW35 | EMBL:FN596251 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001781 |
| EntrezGene:LOC100242820 | wikigene:LOC100242820 | PFAM:PF00412 | ScanProsite:PS00478 | PFscan:PS50023 | PANTHER:PTHR24206 |
| PANTHER:PTHR24206:SF54 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI0001982C8E | ArrayExpress:VIT_02s0025g03980 | EnsemblPlantsGene:VIT_02s0025g03980 |
| EnsemblPlants:VIT_02s0025g03980.t01 | unigene:Vvi.20703 | RefSeq:XP_002283482 | RefSeq:XP_002283482.1 | InterPro:Znf_LIM | SEG:seg |
Description
No Description!
Coordinates
chr2:-:3496347..3497813
Molecular Weight (calculated)
23604.8 Da
IEP (calculated)
8.012
GRAVY (calculated)
-0.574
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSGTTQKC KACDKTVHII DTISADGIAY HKTCFRCSHC NGPLVMSNYS SMDGVLYCKP HFEQLFRESG SLSKKFQSSG KADLSRTPSK LSSMFSGTQD
101: KCSLCKKTVY PLEKVTVEGE FYHKSCFRCS HGGCFLTPSS YAALDGILYC KPHFTQLFRE RGSYSTLNKT ASMKKSTAAA PLPDQNSGQE QLATTPEEDP
201: TPGSEPEPGH TQEQS
101: KCSLCKKTVY PLEKVTVEGE FYHKSCFRCS HGGCFLTPSS YAALDGILYC KPHFTQLFRE RGSYSTLNKT ASMKKSTAAA PLPDQNSGQE QLATTPEEDP
201: TPGSEPEPGH TQEQS
001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
Arabidopsis Description
WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.