Factsheet for GSMUA_Achr5P20680_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P18580_001	Banana	cytosol	80.1	86.56
GSMUA_Achr11P...	Banana	cytosol	86.07	86.5
GSMUA_Achr1P03020_001	Banana	cytosol	73.13	82.58
GSMUA_Achr4P29420_001	Banana	cytosol	78.61	78.61
GSMUA_Achr2P11440_001	Banana	cytosol	74.63	75.0
EES05836	Sorghum	cytosol	70.15	70.5
Os04t0532500-01	Rice	plasma membrane	67.16	67.16
TraesCS6B01G265100.1	Wheat	cytosol	69.15	67.15
Zm00001d051262_P001	Maize	cytosol	68.66	66.67
EES12556	Sorghum	cytosol	67.16	66.5
TraesCS2A01G370800.1	Wheat	cytosol	67.16	66.5
TraesCS2D01G367100.1	Wheat	cytosol	67.66	66.34
TraesCS6A01G236600.1	Wheat	cytosol	69.15	65.57
Zm00001d002844_P003	Maize	cytosol	67.16	65.53
TraesCS2B01G388000.1	Wheat	cytosol	67.16	65.53
Zm00001d025926_P001	Maize	cytosol	66.67	65.37
TraesCS6D01G219200.1	Wheat	cytosol	69.15	65.26
TraesCS1A01G173600.1	Wheat	cytosol	64.18	64.5
GSMUA_Achr6P14980_001	Banana	cytosol	59.7	63.16
GSMUA_Achr10P...	Banana	cytosol	59.7	63.16
TraesCS1B01G190800.1	Wheat	cytosol	65.17	62.98
TraesCS1D01G165200.1	Wheat	cytosol	64.68	62.8
VIT_02s0025g03980.t01	Wine grape	cytosol	60.2	56.28
Zm00001d017382_P001	Maize	cytosol	68.66	55.87
Solyc08g007940.2.1	Tomato	cytosol	55.72	54.37
PGSC0003DMT400014797	Potato	cytosol	44.78	53.57
Solyc08g080740.2.1	Tomato	cytosol	49.75	51.55
KRH59846	Soybean	cytosol	57.21	51.34
GSMUA_Achr1P22510_001	Banana	cytosol	47.26	50.8
GSMUA_Achr8P31070_001	Banana	cytosol	47.76	49.74
Os02t0641000-00	Rice	mitochondrion	37.31	48.7
KRH41147	Soybean	cytosol	55.22	48.68
GSMUA_Achr2P06650_001	Banana	cytosol	44.78	46.15
GSMUA_Achr8P25860_001	Banana	cytosol	45.27	45.05
GSMUA_Achr9P18250_001	Banana	cytosol	43.28	42.23
PGSC0003DMT400007915	Potato	cytosol	43.78	39.46
HORVU6Hr1G060580.5	Barley	plastid	40.3	39.32
HORVU5Hr1G031550.3	Barley	cytosol	16.92	34.34

Protein Annotations

EnsemblPlants:GSMUA_Achr5P20680_001	EnsemblPlants:GSMUA_Achr5T20680_001	EnsemblPlantsGene:GSMUA_Achr5G20680_001	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI000294D19B
UniProt:M0T097	MapMan:15.5.41	:	:	:	:

Description

Putative Pollen-specific protein SF3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G20680_001]

Coordinates

chr5:+:22547129..22548106

Molecular Weight (calculated)

22339.5 Da

IEP (calculated)

7.350

GRAVY (calculated)

-0.587

Length

201 amino acids

Sequence
(BLAST)

001: MSFSGTQDKC KACEKTVHFI DLLTADGVTY HKTCFKCSHC KGTLSMCNYS SMDGVLYCKP HFEQLFKETG TFTRKFPTGT KSGERNEQSK APTKISSMFC
101: GTQDKCATCK KTAYPLETMT MEGESYHKTC FKCSVGGCML TPSSYAALDG ILYCKHHFAQ LFMEKGSYNH VIQAALEKQN AGEQPPSSEP TPEPTEDQEQ
201: T

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.