Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G173600.1 | Wheat | cytosol | 94.2 | 97.5 |
| TraesCS1B01G190800.1 | Wheat | cytosol | 97.58 | 97.12 |
| GSMUA_Achr1P03020_001 | Banana | cytosol | 61.35 | 71.35 |
| GSMUA_Achr4P29420_001 | Banana | cytosol | 66.18 | 68.16 |
| TraesCS6D01G219200.1 | Wheat | cytosol | 68.12 | 66.2 |
| GSMUA_Achr2P18580_001 | Banana | cytosol | 58.94 | 65.59 |
| TraesCS2D01G367100.1 | Wheat | cytosol | 64.73 | 65.37 |
| GSMUA_Achr11P... | Banana | cytosol | 62.8 | 65.0 |
| GSMUA_Achr5P20680_001 | Banana | cytosol | 62.8 | 64.68 |
| GSMUA_Achr2P11440_001 | Banana | cytosol | 60.87 | 63.0 |
| VIT_02s0025g03980.t01 | Wine grape | cytosol | 57.0 | 54.88 |
| TraesCS4D01G213600.1 | Wheat | cytosol | 53.14 | 53.92 |
| Solyc08g007940.2.1 | Tomato | cytosol | 50.72 | 50.97 |
| PGSC0003DMT400014797 | Potato | cytosol | 41.06 | 50.6 |
| KRH59846 | Soybean | cytosol | 54.11 | 50.0 |
| Solyc08g080740.2.1 | Tomato | cytosol | 45.89 | 48.97 |
| KRH41147 | Soybean | cytosol | 53.14 | 48.25 |
| TraesCS5D01G115000.1 | Wheat | cytosol | 42.03 | 44.39 |
| PGSC0003DMT400007915 | Potato | cytosol | 41.55 | 38.56 |
| TraesCS7D01G194800.1 | Wheat | cytosol | 42.03 | 6.8 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G165200.1 | EnsemblPlantsGene:TraesCS1D01G165200 | Gene3D:2.10.110.10 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 |
| PANTHER:PTHR24206:SF33 | PFAM:PF00412 | PFscan:PS50023 | ScanProsite:PS00478 | SEG:seg | SMART:SM00132 |
| SUPFAM:SSF57716 | TIGR:cd09440 | MapMan:15.5.41 | : | : | : |
Description
No Description!
Coordinates
chr1D:+:236275457..236276749
Molecular Weight (calculated)
23179.3 Da
IEP (calculated)
6.681
GRAVY (calculated)
-0.542
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFYGTQDKC KACDKTVHFI DLLTADGIPY HKYCFKCSHC KGTLSMCSYS SMDGVLFCKT HFEQLFKETG SFKKNFPTCA KANNEQSKVP NKYGSVFCGT
101: QDKCAACKKT VYPLEKMTLE GEPYHKTCFK CAHGGCILTT ASYASLNGIL YCQNHFWQLF KETGSYSNLL KPASKNAEEP EAAKEEEQAP EAVEDQVPEA
201: VEDQEHS
101: QDKCAACKKT VYPLEKMTLE GEPYHKTCFK CAHGGCILTT ASYASLNGIL YCQNHFWQLF KETGSYSNLL KPASKNAEEP EAAKEEEQAP EAVEDQVPEA
201: VEDQEHS
001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES
Arabidopsis Description
PLIM2BLIM domain-containing protein PLIM2b [Source:UniProtKB/Swiss-Prot;Acc:Q1ECF5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.