Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G165200.1 | Wheat | cytosol | 97.12 | 97.58 |
| TraesCS1A01G173600.1 | Wheat | cytosol | 93.75 | 97.5 |
| GSMUA_Achr1P03020_001 | Banana | cytosol | 60.58 | 70.79 |
| TraesCS6B01G265100.1 | Wheat | cytosol | 68.27 | 68.6 |
| GSMUA_Achr4P29420_001 | Banana | cytosol | 65.38 | 67.66 |
| GSMUA_Achr2P18580_001 | Banana | cytosol | 58.65 | 65.59 |
| TraesCS2B01G388000.1 | Wheat | cytosol | 64.9 | 65.53 |
| GSMUA_Achr5P20680_001 | Banana | cytosol | 62.98 | 65.17 |
| GSMUA_Achr11P... | Banana | cytosol | 62.5 | 65.0 |
| GSMUA_Achr2P11440_001 | Banana | cytosol | 60.1 | 62.5 |
| VIT_02s0025g03980.t01 | Wine grape | cytosol | 56.25 | 54.42 |
| TraesCS4B01G212600.1 | Wheat | cytosol | 52.4 | 53.43 |
| Solyc08g007940.2.1 | Tomato | cytosol | 50.0 | 50.49 |
| PGSC0003DMT400014797 | Potato | cytosol | 40.38 | 50.0 |
| KRH59846 | Soybean | cytosol | 53.85 | 50.0 |
| Solyc08g080740.2.1 | Tomato | cytosol | 45.19 | 48.45 |
| KRH41147 | Soybean | cytosol | 52.88 | 48.25 |
| TraesCS5B01G107400.1 | Wheat | cytosol | 41.35 | 43.88 |
| PGSC0003DMT400007915 | Potato | cytosol | 40.87 | 38.12 |
| TraesCS7B01G098800.3 | Wheat | cytosol | 41.83 | 6.93 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G190800.1 | EnsemblPlantsGene:TraesCS1B01G190800 | Gene3D:2.10.110.10 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 |
| PANTHER:PTHR24206:SF33 | PFAM:PF00412 | PFscan:PS50023 | ScanProsite:PS00478 | SEG:seg | SMART:SM00132 |
| SUPFAM:SSF57716 | TIGR:cd09440 | MapMan:15.5.41 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:341523287..341524585
Molecular Weight (calculated)
23213.4 Da
IEP (calculated)
6.815
GRAVY (calculated)
-0.560
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFYGTQDKC KACDKTVHFI DLLTADGIPY HKYCFKCSHC KGTLSMCSYS SMDGVLFCKT HFEQLFKETG SFKKNFPTCA KANNEQSKAP NKYGSVFCGT
101: QDKCAACKKT VYPLEKMTLE GEPYHKTCFK CARGGCILTT ASYASLNGIL YCQNHFWQLF KETGSYSNLL KPASAKNADE PEAAKEEEQA PEAVEEQAPE
201: AVEDQEHS
101: QDKCAACKKT VYPLEKMTLE GEPYHKTCFK CARGGCILTT ASYASLNGIL YCQNHFWQLF KETGSYSNLL KPASAKNADE PEAAKEEEQA PEAVEEQAPE
201: AVEDQEHS
001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES
Arabidopsis Description
PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.