Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P03020_001 | Banana | cytosol | 78.61 | 88.76 |
| GSMUA_Achr2P11440_001 | Banana | cytosol | 85.07 | 85.5 |
| GSMUA_Achr2P18580_001 | Banana | cytosol | 73.13 | 79.03 |
| GSMUA_Achr11P... | Banana | cytosol | 78.61 | 79.0 |
| GSMUA_Achr5P20680_001 | Banana | cytosol | 78.61 | 78.61 |
| EES05836 | Sorghum | cytosol | 72.64 | 73.0 |
| TraesCS6B01G265100.1 | Wheat | cytosol | 75.12 | 72.95 |
| EES12556 | Sorghum | cytosol | 73.13 | 72.41 |
| Os04t0532500-01 | Rice | plasma membrane | 71.64 | 71.64 |
| TraesCS6A01G236600.1 | Wheat | cytosol | 75.12 | 71.23 |
| TraesCS6D01G219200.1 | Wheat | cytosol | 75.12 | 70.89 |
| Zm00001d051262_P001 | Maize | cytosol | 72.64 | 70.53 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 66.67 | 70.53 |
| TraesCS2A01G370800.1 | Wheat | cytosol | 71.14 | 70.44 |
| Zm00001d002844_P003 | Maize | cytosol | 72.14 | 70.39 |
| TraesCS2D01G367100.1 | Wheat | cytosol | 71.14 | 69.76 |
| GSMUA_Achr10P... | Banana | cytosol | 65.67 | 69.47 |
| Zm00001d025926_P001 | Maize | cytosol | 70.65 | 69.27 |
| TraesCS2B01G388000.1 | Wheat | cytosol | 70.65 | 68.93 |
| TraesCS1A01G173600.1 | Wheat | cytosol | 67.16 | 67.5 |
| TraesCS1D01G165200.1 | Wheat | cytosol | 68.16 | 66.18 |
| TraesCS1B01G190800.1 | Wheat | cytosol | 67.66 | 65.38 |
| VIT_02s0025g03980.t01 | Wine grape | cytosol | 68.16 | 63.72 |
| PGSC0003DMT400014797 | Potato | cytosol | 48.26 | 57.74 |
| Zm00001d017382_P001 | Maize | cytosol | 70.65 | 57.49 |
| Solyc08g007940.2.1 | Tomato | cytosol | 58.71 | 57.28 |
| Solyc08g080740.2.1 | Tomato | cytosol | 54.73 | 56.7 |
| KRH59846 | Soybean | cytosol | 62.69 | 56.25 |
| GSMUA_Achr1P22510_001 | Banana | cytosol | 51.74 | 55.62 |
| KRH41147 | Soybean | cytosol | 61.69 | 54.39 |
| GSMUA_Achr8P31070_001 | Banana | cytosol | 51.24 | 53.37 |
| Os02t0641000-00 | Rice | mitochondrion | 40.3 | 52.6 |
| GSMUA_Achr2P06650_001 | Banana | cytosol | 48.26 | 49.74 |
| GSMUA_Achr8P25860_001 | Banana | cytosol | 47.26 | 47.03 |
| PGSC0003DMT400007915 | Potato | cytosol | 49.75 | 44.84 |
| GSMUA_Achr9P18250_001 | Banana | cytosol | 45.77 | 44.66 |
| HORVU6Hr1G060580.5 | Barley | plastid | 41.79 | 40.78 |
| HORVU5Hr1G031550.3 | Barley | cytosol | 16.92 | 34.34 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P29420_001 | EnsemblPlants:GSMUA_Achr4T29420_001 | EnsemblPlantsGene:GSMUA_Achr4G29420_001 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF22 | PFAM:PF00412 |
| PFscan:PS50023 | ScanProsite:PS00478 | SEG:seg | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI000295D11F |
| UniProt:M0ST54 | MapMan:15.5.41 | : | : | : | : |
Description
Putative Pollen-specific protein SF3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G29420_001]
Coordinates
chr4:+:27382025..27383461
Molecular Weight (calculated)
22162.1 Da
IEP (calculated)
7.978
GRAVY (calculated)
-0.616
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSGTQDKC KACDKTVHFI DLLTADGVPY HKTCFKCSHC KGTLSMCNYS SMDGILYCKP HFEQLFKETG SFSKKFPTSS KSGEKELSRT PSKVSSMFSG
101: TQDKCASCKK TAYPLEKLTV EGESYHKTCF KCSHGGCTLT PSSYAALDGI LYCKHHFAQL FKEKGSYNHL NKVASMKRSS GAEEAPSEEA AAEPTQEEEQ
201: S
101: TQDKCASCKK TAYPLEKLTV EGESYHKTCF KCSHGGCTLT PSSYAALDGI LYCKHHFAQL FKEKGSYNHL NKVASMKRSS GAEEAPSEEA AAEPTQEEEQ
201: S
001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES
Arabidopsis Description
GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.