Factsheet for PGSC0003DMT400007915

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080740.2.1	Tomato	cytosol	74.89	86.08
PGSC0003DMT400014797	Potato	cytosol	43.5	57.74
GSMUA_Achr1P03020_001	Banana	cytosol	41.26	51.69
PGSC0003DMT400069763	Potato	cytosol	43.5	51.32
GSMUA_Achr4P29420_001	Banana	cytosol	44.84	49.75
KRH59846	Soybean	cytosol	49.78	49.55
VIT_02s0025g03980.t01	Wine grape	cytosol	47.53	49.3
EES05836	Sorghum	cytosol	43.95	49.0
GSMUA_Achr2P11440_001	Banana	cytosol	43.5	48.5
TraesCS6B01G265100.1	Wheat	cytosol	44.84	48.31
KRH41147	Soybean	cytosol	49.33	48.25
GSMUA_Achr2P18580_001	Banana	cytosol	39.91	47.85
Zm00001d051262_P001	Maize	cytosol	44.39	47.83
Os04t0532500-01	Rice	plasma membrane	43.05	47.76
Os02t0641000-00	Rice	mitochondrion	32.74	47.4
TraesCS6A01G236600.1	Wheat	cytosol	44.84	47.17
TraesCS6D01G219200.1	Wheat	cytosol	44.84	46.95
EES12556	Sorghum	cytosol	42.6	46.8
Zm00001d025926_P001	Maize	cytosol	42.6	46.34
TraesCS2A01G370800.1	Wheat	cytosol	42.15	46.31
Zm00001d002844_P003	Maize	cytosol	42.6	46.12
TraesCS2D01G367100.1	Wheat	cytosol	42.15	45.85
TraesCS2B01G388000.1	Wheat	cytosol	42.15	45.63
GSMUA_Achr11P...	Banana	cytosol	40.81	45.5
GSMUA_Achr5P20680_001	Banana	cytosol	39.46	43.78
PGSC0003DMT400083108	Potato	cytosol	34.53	43.02
TraesCS1A01G173600.1	Wheat	cytosol	38.56	43.0
PGSC0003DMT400000453	Potato	cytosol	42.6	42.99
PGSC0003DMT400026590	Potato	cytosol	40.81	42.92
TraesCS1D01G165200.1	Wheat	cytosol	38.56	41.55
TraesCS1B01G190800.1	Wheat	cytosol	38.12	40.87
PGSC0003DMT400062907	Potato	cytosol	34.53	40.74
PGSC0003DMT400055738	Potato	cytosol	40.81	40.09
Zm00001d017382_P001	Maize	cytosol	44.39	40.08
PGSC0003DMT400030205	Potato	cytosol	31.39	37.43
PGSC0003DMT400059073	Potato	cytosol	32.29	37.31
HORVU6Hr1G060580.5	Barley	plastid	33.63	36.41
PGSC0003DMT400027522	Potato	cytosol	30.94	35.75
HORVU5Hr1G031550.3	Barley	cytosol	13.45	30.3

Protein Annotations

EnsemblPlants:PGSC0003DMT400007915	EnsemblPlantsGene:PGSC0003DMG400003062	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF54	PFAM:PF00412	PFscan:PS50023
PGSC:PGSC0003DMG400003062	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002948EC7	UniProt:M0ZTR1	MapMan:15.5.41

Description

Pollen-specific protein SF3 [Source:PGSC_GENE;Acc:PGSC0003DMG400003062]

Coordinates

chr8:-:54367597..54370736

Molecular Weight (calculated)

24723.2 Da

IEP (calculated)

8.593

GRAVY (calculated)

-0.601

Length

223 amino acids

Sequence
(BLAST)

001: MISTNGVAYH NTCFRCNHCN GRLALSTYST LDGVLYCKPH FEQIYKEKGG APLKHSASLG RQNELLSTYS TLDGVLYCKP HFEQIYKEKG GAPLKHSASL
101: GRQNELNRSS SKVSALFSGT QDKCAACKKT VYPLEKVTVD GEMYHKICFR CVHGGCKLTT SSYAAFDGRL YCKPHFSQLF KEKGSYNHLS KNASMKKDES
201: LINVEQEGSS TTSAAEETQD DKS

Best Arabidopsis Sequence Match ( AT2G39900.1 )
(BLAST)

001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES

Arabidopsis Description

WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.