Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g071310.2.1 | Tomato | cytosol | 100.0 | 100.0 |
| VIT_17s0000g07820.t01 | Wine grape | cytosol | 84.36 | 82.97 |
| PGSC0003DMT400062907 | Potato | cytosol | 86.03 | 81.48 |
| KRH54438 | Soybean | cytosol | 83.8 | 78.12 |
| KRH33303 | Soybean | cytosol | 23.46 | 76.36 |
| PGSC0003DMT400030205 | Potato | cytosol | 75.42 | 72.19 |
| KRH63478 | Soybean | cytosol | 81.56 | 71.57 |
| KRH03352 | Soybean | cytosol | 82.12 | 70.33 |
| KRG90348 | Soybean | cytosol | 27.93 | 69.44 |
| PGSC0003DMT400027522 | Potato | cytosol | 73.18 | 67.88 |
| KRH57029 | Soybean | cytosol | 81.01 | 67.44 |
| PGSC0003DMT400059073 | Potato | cytosol | 72.07 | 66.84 |
| PGSC0003DMT400069763 | Potato | cytosol | 55.87 | 52.91 |
| PGSC0003DMT400026590 | Potato | cytosol | 51.4 | 43.4 |
| PGSC0003DMT400014797 | Potato | cytosol | 40.22 | 42.86 |
| PGSC0003DMT400000453 | Potato | cytosol | 50.28 | 40.72 |
| PGSC0003DMT400055738 | Potato | cytosol | 51.4 | 40.53 |
| PGSC0003DMT400007915 | Potato | cytosol | 43.02 | 34.53 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400083108 | EnsemblPlantsGene:PGSC0003DMG400033056 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF35 | PFAM:PF00412 | PFscan:PS50023 |
| PGSC:PGSC0003DMG400033056 | ScanProsite:PS00478 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI00004F955D | UniProt:M1D6I1 |
| MapMan:15.5.41 | : | : | : | : | : |
Description
Pollen specific LIM domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400033056]
Coordinates
chr6:+:52150602..52154099
Molecular Weight (calculated)
20241.0 Da
IEP (calculated)
8.787
GRAVY (calculated)
-0.669
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFGGTTQK CKACEKTVYL VDQLTADNKV YHKACFRCHH CKGTLKLSNY NSFEGVLYCR PHFDQLFKMT GSLDKSFEGA PKTVRERSAD QGSNSKVSSL
101: FGGTQDKCVA CKKTVYPLEK VAVDGTSYHR PCFKCSHGGC VISPSNYVAH EHRLYCRHHH TQLFKERGNF SQMEDHEKN
101: FGGTQDKCVA CKKTVYPLEK VAVDGTSYHR PCFKCSHGGC VISPSNYVAH EHRLYCRHHH TQLFKERGNF SQMEDHEKN
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.