CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03352	Soybean	cytosol	92.56	95.22
KRH54438	Soybean	cytosol	75.35	84.38
VIT_17s0000g07820.t01	Wine grape	cytosol	69.77	82.42
Solyc06g071310.2.1	Tomato	cytosol	67.44	81.01
PGSC0003DMT400083108	Potato	cytosol	67.44	81.01
KRH63478	Soybean	cytosol	73.02	76.96
KRH33303	Soybean	cytosol	19.53	76.36
PGSC0003DMT400062907	Potato	cytosol	64.19	73.02
Solyc03g114000.2.1	Tomato	cytosol	63.72	72.49
KRH61425	Soybean	cytosol	59.07	64.8
KRH52104	Soybean	cytosol	59.07	64.8
KRG90348	Soybean	cytosol	21.4	63.89
KRH05574	Soybean	cytosol	58.14	63.78
KRG88767	Soybean	cytosol	58.14	63.78
KRH35659	Soybean	cytosol	53.02	63.33
KRH15005	Soybean	cytosol	47.91	54.5
KRG97787	Soybean	cytosol	48.84	53.03
KRH31081	Soybean	cytosol	49.3	53.0
KRH65108	Soybean	cytosol	41.86	43.69
KRG93772	Soybean	cytosol	14.42	42.47
KRH59846	Soybean	cytosol	44.19	42.41
KRH48190	Soybean	cytosol	41.4	42.38
KRH40492	Soybean	cytosol	42.33	41.55
KRH41147	Soybean	cytosol	43.72	41.23
KRH00704	Soybean	cytosol	41.4	41.2
KRH73124	Soybean	cytosol	27.91	35.71

Protein Annotations

EMBL:ACUP02002807	EnsemblPlants:KRH57029	EnsemblPlantsGene:GLYMA_05G034700	EntrezGene:100805084	Gene3D:2.10.110.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF35
PFAM:PF00412	PFscan:PS50023	ProteinID:KRH57029	ProteinID:KRH57029.1	ScanProsite:PS00478	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI0002339E25	UniProt:I1JZX3	MapMan:15.5.41	:	:

Description

hypothetical protein

Coordinates

chr5:+:3046414..3050274

Molecular Weight (calculated)

24423.8 Da

IEP (calculated)

8.600

GRAVY (calculated)

-0.699

Length

215 amino acids

Sequence
(BLAST)

001: MASFAGTTQK CTACEKKVYW VEQLTADNKV YHKSCFRCHH CKGTLKLSNY CSFEGVLYCK PHFHQLFKMT GSLDKSFEGV PRSVRVERSA DQVQTNKVSR
101: LFSGTQEKCV GCKKTVYPIE KVAVDGKSYH KSCFRCTHGG CVISPSNYIA HEHRLYCRHH HTQLFKQKGN FSQLDKHENV QVITEITITQ HTENTTQHPD
201: PSNGNTDTTP AEESS

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.